ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAGGCGC
GGAATTCCTAAATGTACTTACATCGGCGGCTGCTGTAACGGATTTGCGTA
ATTCATGCAGTAATAATGATACGGGGAGTGCGGGTGTCTGGGGCCACAGC
AAACACACCAGACCGATGAGGGTTTTGCTACAAATGTCATCCTCTTTCAG
TCGGTGTGTGTTTCAGTAACTGCAGGGATGATTGTTTTTGATGCTGACAT
CAAATGGCAAGAGCCAAAGCTCTTCCTGGATGTGAGAAGCAGCCAAATGG
TGTCTGGAATCCTCAACACTCCCCGCCCCCATTCTGTGCACCGGAGCAGG
ACAAGAGAGAGAAGGCGAAGCCCTTTAATGGGCTACAAAACCTCCAGACA
CATCTCTCTCCTTTACTTTCTCAGCATTTCTAAGTTTCCAGTGATACAAA
AGCCAGCATCCCTGGCCCAGTCTCCATCTCGGCTGGGGGAGCACAGTTTT
TCCGCACTAATCTGGGCAGGCTGCCACTTGGGGGCCTGGATAATTCCCTT
GTAATGCAAAGAAAACCCAATTCACTCACCTTTCCCAGGATCCTGGGGAG
CTGCTTCAGCCCGGTTACAATCAAGAAACGCCACAGTTAAAAGACTCGTA
AGGAGCCAGGAGATAGCTCCTAAGTAGGGGCTTCAGATGGACACCAAAGA
GAAATGGCTCATTTTCTCTCTGGNTGAGCG

NTGAGGGTAGATTTTNTCGATGATAGGTGTGGCCAGGCGGCCGCCTGTTT
CAAAAAGGGGGGNGACANANAGATTATCAGAAAAAGTCCTGAAGCCGAAG
GCTTTAGAATTACCATGAAATCATTTGAATATCCTTTTAAAAAAAGACAC
ACACACACACACAAAATGTAAAACACAGCAGACTTCCCAGATATAGTAGA
ATCAACTAACAAGTAGTTTGACTGCACCTTTTTTATAACCTCTAGACCAT
GGGTTCTCATTCTTCCGGCGCGGAAAACCTTTAAAACAGTTCCCCCAAAC
GGGGGGGGGACCCCCACCCCACAAAGTTTTTTTTTTTTGGGAACTCCAAA
AAGGGGAAATTTTTCCCCCGGGTTTTAAATTCTAAGGGGGATTTAAATAT
AAGGGAAATCTGGAAATGGGGCCCCCTTGGGGGAAAGGGGCTTTTTTAGC
CCCCCCTTTGGGAACCTTAAATAAATCTGTCGCCCCCCCACCTGTGGGAA
AAAAACGGGGGGATTAAAAGAGGGTCCCCACCAAACACCCCCCAAAAAAA
TGGGGGGGGGGATCTCATCCGTAATTGTTTGCGCGGCCCTGGCGGAGAAA
TAGCCCCCCCCGGGGGAGGAAAAAAAAAACTAAGCCCTTCTACAACACCA
TTAAAAAATTTTTTTGCCTTTGTGGGGTGAAACAATATCCCTTACTTAGA
CGAGTAGG

Query= MSMg01no480_n17.b1 MSMg01no480_n17.b1 CHROMAT_FILE:
MSMg01no480_n17.b1 PHD_FILE: MSMg01no480_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:18 2005
         (675 letters)



>mm_chr17_88558291_88559367
          Length = 1077

 Score = 1241 bits (642), Expect = 0.0
 Identities = 666/674 (98%), Gaps = 2/674 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctaaatg-tacttacatcggcggctgctgtaacggatttgcgtaattcatgcag 61
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctaaatgttatttacatcggcggctgctgtaacggatttgcgtaattcatgcag 262

                                                                       
Query: 62  taataatgatacggggagtgcgggtgtctggggccacagcaaacacaccagaccgatgag 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taataatgatacggggagtgcgggtgtctggggccacagcaaacacaccagaccgatgag 322

                                                                       
Query: 122 ggttttgctacaaatgtcatcctctttcagtcggtgtgtgtttcagtaactgcagggatg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ggttttgctacaaatgtcatcctctttcagtcggtgtgtgtttcagtaactgcagggatg 382

                                                                       
Query: 182 attgtttttgatgctgacatcaaatggcaagagccaaagctcttcctggatgtgagaagc 241
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 383 attgtttttgatgctgacatcaaatggcaagagccaaagctcttcctggatgcgagaagc 442

                                                                       
Query: 242 agccaaatggtgtctggaatcctcaacactccccgccccc-attctgtgcaccggagcag 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 443 agccaaatggtgtctggaatcctcaacactccccgcccccaattctgtgcaccggagcag 502

                                                                       
Query: 301 gacaagagagagaaggcgaagccctttaatgggctacaaaacctccagacacatctctct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gacaagagagagaaggcgaagccctttaatgggctacaaaacctccagacacatctctct 562

                                                                       
Query: 361 cctttactttctcagcatttctaagtttccagtgatacaaaagccagcatccctggccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctttactttctcagcatttctaagtttccagtgatacaaaagccagcatccctggccca 622

                                                                       
Query: 421 gtctccatctcggctgggggagcacagtttttccgcactaatctgggcaggctgccactt 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtctccatctcggctgggggcgcacagtttttccgcactaatctgggcaggctgccactt 682

                                                                       
Query: 481 gggggcctggataattcccttgtaatgcaaagaaaacccaattcactcacctttcccagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 683 gggggcctggataattcccttgtaatgcaaagaaaacccaattcactcacctttcctggg 742

                                                                       
Query: 541 atcctggggagctgcttcagcccggttacaatcaagaaacgccacagttaaaagactcgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atcctggggagctgcttcagcccggttacaatcaagaaacgccacagttaaaagactcgt 802

                                                                       
Query: 601 aaggagccaggagatagctcctaagtaggggcttcagatggacaccaaagagaaatggct 660
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaggagccaggagataactcctaagtaggggcttcagatggacaccaaagagaaatggct 862

                         
Query: 661 cattttctctctgg 674
           ||||||||||||||
Sbjct: 863 cattttctctctgg 876


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1077
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1067
Effective search space:   709555
Effective search space used:   709555
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)