Query= MSMg01no481_j01.b1 MSMg01no481_j01.b1 CHROMAT_FILE:
MSMg01no481_j01.b1 PHD_FILE: MSMg01no481_j01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:14 2005
(604 letters)
>mm_chr17_83980376_83981379
Length = 1004
Score = 1058 bits (547), Expect = 0.0
Identities = 586/603 (97%), Gaps = 8/603 (1%)
Strand = Plus / Plus
Query: 6 gaattcagcatttg----tttccgggactattactcttcccaatggaggtgaaattatcc 61
|||||||||||||| | ||| ||||||||||| |||||||||||||||||||||
Sbjct: 206 gaattcagcatttgaaact----ggggctattactctttccaatggaggtgaaattatcc 261
Query: 62 agaaaactggctcatacaggaggaaagtggactcccactggaatgacaaggcataaacaa 121
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 agacaactggctcatacaggaggaaagtggactcccactggaatgacaaggcataaacaa 321
Query: 122 aaatgtatatttactaagtcattgtatattagtatatataaaaaaaaaatcaatctgtca 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaatgtatatttactaagtcattgtatattagtatatataaaaaaaaaatcaatctgtca 381
Query: 182 ctatgtttccagtcctggctggttttgtcaacttgacacaagctagagtcatcagagagg 241
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 382 ctatgtttccagtcctggctggttttgtcaacttgacacaagctcgagtcatcagagagg 441
Query: 242 aaggaacctcagatgatgaaacgcctccatgagatccagctgtaaggcattttctcaatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaggaacctcagatgatgaaacgcctccatgagatccagctgtaaggcattttctcaatt 501
Query: 302 agtgatcggtgaggggagggcccagcctattgtgggtgatgccatccctgggctggtggt 361
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 502 agtgatcggtgaggggagggcccagcctattgtgggtgacgccatccctgggctggtggt 561
Query: 362 cctgggttctataagaaagcaggctgaactatctatgtaagcagcacccctccatggcct 421
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 562 cctgggttctataagaaagcaggctgaactatctatgtaagcagcaccccaccatggcct 621
Query: 422 ctgcatcagctcctgcctccaggttcctcccctgtttgagttcctgtcctgtcctttctt 481
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 622 ctgcatcagctcctgcctccaggttcctccccagtttgagttcctgtcctgtcctttctt 681
Query: 482 ccttcgatgataaacagtgctgtggaagtgtaagcccagtgaacccttccctctccagct 541
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ccttcgatgaaaaacagtgctgtggaagtgtaagcccagtgaacccttccctctccagct 741
Query: 542 tgctttctggtcatggagtttcatccagagagacagaaactccaagacatttcctttctt 601
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 742 tgctttctggtcatggagtttcatccagaaagacagaaactccaagacatttcctttctt 801
Query: 602 aca 604
|||
Sbjct: 802 aca 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_j01.g1 MSMg01no481_j01.g1 CHROMAT_FILE:
MSMg01no481_j01.g1 PHD_FILE: MSMg01no481_j01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:14 2005
(594 letters)
>mm_chr17_84089412_84090406
Length = 995
Score = 739 bits (382), Expect = 0.0
Identities = 408/418 (97%), Gaps = 4/418 (0%)
Strand = Plus / Minus
Query: 181 ttcctcctcctcctcctcttcctcttg---ttatcatcatcatcattattattggcataa 237
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 995 ttcctcctcctcctcctcttcctcttgttattatcatcatcatcattattattggcataa 936
Query: 238 atgctgaagtgtatgcacctgtgaaggtcatagaaccaactatacagacttagttctctc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 atgctgaagtgtatgcacctgtgaaggtcatagaaccaactatacagacttagttctctc 876
Query: 298 cttacatgggttctagggacgaactcaggttagcacacttgtgtagcaaacaccttttcc 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 cttacatgggttctagggacgaactcaggttagcacacttgtgtagcaaacaccttttcc 816
Query: 358 tgctgagccgtcttactgactgtagtctaaaagacatagctgaagctagtctgtgtggcc 417
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 tgctgagccatcttactgactgtagtctaaaagacatagctgaagctagtctgtgtggcc 756
Query: 418 aagccttgttgtgtagccaaagcagacctggaattcctgaccccctacctccacctcccc 477
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 755 aagccttgttgtgtagccaaagcaggcctggaattcctgaccccctacctccacctcccc 696
Query: 478 agtgctggactgataacactgtgctggggtcaaacctggag-cgcacacatggtaatgtt 536
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 695 agtgctggactgataacactgtgctggggtcaaacctggagcctcacacatggtaatgtt 636
Query: 537 gttagcgtcccaggacctggagtcacctaagttacctaggagataagcctccaggcat 594
|||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 635 gttatcgtcccaggacctggaatcacctaagtcacctaggagataagcctccaggcat 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 995
Length adjustment: 10
Effective length of query: 584
Effective length of database: 985
Effective search space: 575240
Effective search space used: 575240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
