BAC Information

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BAC

Clone NameMSMg01-481J17
Chromosome17 (Build37)
Map Location 56,038,372 - 56,039,042
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426
Downstream geneEG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481J17.T7 (MSMg01no481_j17.b1)MSMg01-481J17.TJ (MSMg01no481_j17.g1)
ACCAG561973AG561974
length825764
length of high quality
(start - end)
74 (65 - 138)669 (70 - 738)
definitionCHROMAT_FILE: MSMg01no481_j17.b1 PHD_FILE: MSMg01no481_j17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:18 2005CHROMAT_FILE: MSMg01no481_j17.g1 PHD_FILE: MSMg01no481_j17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGNAAATAGGNGGAATTNTT
ATTTGTTTCANAATACTAAGAGCTGGCTTCCTGAGCTCATCTAGTGACGA
GTATCTCCTANAGACCTCCGCTAATCGATCTTTTTTCTTTTCTTTTTTCT
TTTCCTTCCTTCTAATCTCTCCCCAGGGTCCNNTACTGACAANNACTTTC
CCCCGGNTTCCAGACCCTTGGGAAGGGGCGGATGGGGNTCGGGGGGTTTC
TCTGGGTTACTGGAGCACTCCGGNNNNNCCGNNNNNNNNNNNACNNNTCT
ATGGCGNNNNNNNNTNNNNTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAAAATAAAAAAAAAAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNNNNNNNNNANAN
NANANAANNAAAAAAAAGGGGGGGG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCATATGATGGCTCACAAC
TATATTTGATGATATCCGATGCCTTCTTCTGGTGTGTCTGAAGACAGCAA
TGGTTTACTCACAGACATAGTCTTTTAAAAAAGAAAAAAAAAAACGAGAT
TTAAACAGGAATACTAGTTGTTTTGAACACTGAGACTTCTTGGAATTTTA
AATTAATCACAACTAGTAAATAGTAACCTATGTTCCCATTATTCTGGTTA
ATTTCTTTGCTTTGTTAATTTCATCTCTTTTAAACTTTTTAACTACACGT
TTATACCTGTGCGATGGCGTGCATGTGCCAGTTACAGGAAAACTTAAAGA
TGTCTATTCTCTAGGTCCTCGATGTGAGTACTAGAGGTCAAACCAAACTA
GTTAAGTTTAGCAGCACCTGGTGAGTGAACTCATTGGCCCTTATTTTGGT
TTCAACAGTATTTATATTATGTTCTGCTGTGTGGATGTGCATACAACCCA
AGTGTAGAATTCAGAGAAAAAATTGCATGAGTAGTGTGGCTATCCAAGAG
AATGAACTTAGGTCTTCAAGCTTACTAGCAACCACTTTTACTTCCTGAGA
CAACTCTCTGGCATACATTTGTGTTTTTGTGAAAGTGTTAAGGACAAGTT
TTAGGCTCAGAATAAAATAATACTAAAAAAAAAAAGACACATAAATATAA
TTTTCATTCACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_j17.g1 MSMg01no481_j17.g1 CHROMAT_FILE:
MSMg01no481_j17.g1 PHD_FILE: MSMg01no481_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:18 2005
         (669 letters)



>mm_chr17_56038052_56039125
          Length = 1074

 Score = 1266 bits (655), Expect = 0.0
 Identities = 665/671 (99%), Gaps = 5/671 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcccagcaaccatatgatggctcacaactatatttgatgatatccgatgccttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 991 aattcccagcaaccatatgatggctcacaactatatttgatgatatccgatgccttcttc 932

                                                                       
Query: 61  tggtgtgtctgaagacagcaatggtttactcacagacatagtcttttaaaaaagaaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 tggtgtgtctgaagacagcaatggtttactcacagacatagtcttttaaaaaagaaaaaa 872

                                                                       
Query: 121 aaaaacgagatttaaacaggaatactagttgttttgaacactgagacttcttggaatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 aaaaacgagatttaaacaggaatactagttgttttgaacactgagacttcttggaatttt 812

                                                                       
Query: 181 aa-----attaatcacaactagtaaatagtaacctatgttcccattattctggttaattt 235
           ||     |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaaatatattaattacaactagtaaatagtaacctatgttcccattattctggttaattt 752

                                                                       
Query: 236 ctttgctttgttaatttcatctcttttaaactttttaactacacgtttatacctgtgcga 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 ctttgctttgttaatttcatctcttttaaactttttaactacacgtttatacctgtgcga 692

                                                                       
Query: 296 tggcgtgcatgtgccagttacaggaaaacttaaagatgtctattctctaggtcctcgatg 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tggcgtgcatgtgccagttacaggaaaacttaaagatgtctattctctaggtcctcgatg 632

                                                                       
Query: 356 tgagtactagaggtcaaaccaaactagttaagtttagcagcacctggtgagtgaactcat 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 tgagtactagaggtcaaaccaaactagttaagtttagcagcacctggtgagtgaactcat 572

                                                                       
Query: 416 tggcccttattttggtttcaacagtatttatattatgttctgctgtgtggatgtgcatac 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tggcccttattttggtttcaacagtatttatattatgttctgctgtgtggatgtgcatac 512

                                                                       
Query: 476 aacccaagtgtagaattcagagaaaaaattgcatgagtagtgtggctatccaagagaatg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 aacccaagtgtagaattcagagaaaaaattgcatgagtagtgtggctatccaagagaatg 452

                                                                       
Query: 536 aacttaggtcttcaagcttactagcaaccacttttacttcctgagacaactctctggcat 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aacttaggtcttcaagcttactagcaaccacttttacttcctgagacaactctctggcat 392

                                                                       
Query: 596 acatttgtgtttttgtgaaagtgttaaggacaagttttaggctcagaataaaataatact 655
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acatttgtgtttttgtgaaagtgttaaggacaagttttaggctcagaataaaataatact 332

                      
Query: 656 aaaaaaaaaaa 666
           |||||||||||
Sbjct: 331 aaaaaaaaaaa 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1074
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1064
Effective search space:   701176
Effective search space used:   701176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)