MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-481L03
Chromosome	17 (Build37)
Map Location	44,711,892 - 44,712,027
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Pla2g7, Tdrd6, Slc25a27, Cyp39a1, Dscr1l1, Enpp5, Enpp4, Clic5
Downstream gene	Runx2, Supt3h, 4930564C03Rik, EG210562, EG668314, Cdc5l, Spats1, EG668319, Aars2, Tcte1, Gm323, Nfkbie, Slc35b2, Hsp90ab1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Pla2g7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27226 MGI:1351327
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tdrd6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210510 MGI:2679727
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74011 MGI:1921261
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cyp39a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56050 MGI:1927096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dscr1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:53901 MGI:1858219
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Enpp5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:83965 MGI:1933830
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Enpp4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224794 MGI:2682634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Clic5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224796 MGI:1917912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Runx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12393 MGI:99829
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Supt3h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109115 MGI:1923723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930564C03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75341 MGI:1922591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	EG210562 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210562 MGI:3649016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins

name	EG668314 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668314 MGI:3645356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Cdc5l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71702 MGI:1918952
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spats1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71020 MGI:1918270
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668319 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668319 MGI:3645365
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 1076 ESTs, 10 Proteins

name	Aars2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224805 MGI:2681839
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcte1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21645 MGI:98640
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm323 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:210573 MGI:2685169
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nfkbie (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18037 MGI:1194908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc35b2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73836 MGI:1921086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hsp90ab1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15516 MGI:96247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pla2g7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801997 GeneID:27226 MGI:1351327
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma) transcript_id : NM_013737.3

name	Tdrd6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38259207 GeneID:210510 MGI:2679727
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tudor domain containing 6 transcript_id : NM_198418.1

name	Slc25a27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357157 GeneID:74011 MGI:1921261
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25, member 27 transcript_id : NM_028711.2

name	Cyp39a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369036 GeneID:56050 MGI:1927096
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome P450, family 39, subfamily a, polypeptide 1 transcript_id : NM_018887.3

name	Dscr1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46560586 GeneID:53901 MGI:1858219
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Down syndrome critical region gene 1-like 1 transcript_id : NM_207649.1

name	Dscr1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46559378 GeneID:53901 MGI:1858219
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Down syndrome critical region gene 1-like 1 transcript_id : NM_030598.2

name	Enpp5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14030778 GeneID:83965 MGI:1933830
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectonucleotide pyrophosphatase/phosphodiesterase 5 transcript_id : NM_032003.1

name	Enpp4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84872230 GeneID:224794 MGI:2682634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ectonucleotide pyrophosphatase/phosphodiesterase 4 transcript_id : NM_199016.2

name	Clic5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85662398 GeneID:224796 MGI:1917912
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chloride intracellular channel 5 transcript_id : NM_172621.2

name	Runx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909357 GeneID:12393 MGI:99829
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : runt related transcription factor 2 transcript_id : NM_009820.2

name	Supt3h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803014 GeneID:109115 MGI:1923723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of Ty 3 homolog (S. cerevisiae) transcript_id : NM_178652.2

name	4930564C03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401995 GeneID:75341 MGI:1922591
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 4930564C03 gene transcript_id : XM_484637.3

name	EG210562 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94401997 GeneID:210562 MGI:3649016
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 14 ESTs, 4 Proteins product : predicted gene, EG210562 transcript_id : XM_140033.6

name	Cdc5l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892345 GeneID:71702 MGI:1918952
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle 5-like (S. pombe) transcript_id : NM_152810.2

name	Spats1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368476 GeneID:71020 MGI:1918270
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spermatogenesis associated, serine-rich 1 transcript_id : NM_027649.2

name	EG668319 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268855 GeneID:668319 MGI:3645365
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 1076 ESTs, 10 Proteins product : predicted gene, EG668319 transcript_id : XM_001004126.2

name	Aars2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:52630310 GeneID:224805 MGI:2681839
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : alanyl-tRNA synthetase 2, mitochondrial (putative) transcript_id : NM_198608.2

name	Tcte1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430563 GeneID:21645 MGI:98640
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : t-complex-associated testis expressed 1 transcript_id : NM_013688.2

name	Gm323 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701443 GeneID:210573 MGI:2685169
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 323, (NCBI) transcript_id : NM_001013749.1

name	Nfkbie (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130686 GeneID:18037 MGI:1194908
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon transcript_id : NM_008690.3

name	Slc35b2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802496 GeneID:73836 MGI:1921086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35, member B2 transcript_id : NM_028662.2

name	Hsp90ab1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130847 GeneID:15516 MGI:96247
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : heat shock protein 90kDa alpha (cytosolic), class B member 1 transcript_id : NM_008302.3

name	Pla2g7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31980752 CCDS:CCDS28796.1 GeneID:27226 MGI:1351327
definition	GO_component : GO:0008247 - 2-acetyl-1-alkylglycerophosphocholine esterase complex [Evidence IEA] GO_function : GO:0003847 - 1-alkyl-2-acetylglycerophosphocholine esterase activity [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006954 - inflammatory response [Evidence TAS]; GO:0016042 - lipid catabolism [Evidence IEA] codon_start : 1 note : phospholipase A2 group VII (platelet-activating factor acetylhydrolase, plasma); PAF acetylhydrolase product : phospholipase A2, group VII protein_id : NP_038765.2

name	Tdrd6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38259208 CCDS:CCDS28797.1 GeneID:210510 MGI:2679727
definition	GO_component : GO:0018994 - polar granule [Evidence IDA] GO_function : GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 exception : mismatches in translation note : NY-CO-45-like; tudor repeat 2 protein product : tudor repeat 2 protein_id : NP_940810.1

name	Slc25a27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312006 CCDS:CCDS28798.1 GeneID:74011 MGI:1921261
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA] GO_process : GO:0006839 - mitochondrial transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : solute carrier family 25, member 27 protein_id : NP_082987.1

name	Cyp39a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256529 CCDS:CCDS28799.1 GeneID:56050 MGI:1927096
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence TAS] [Evidence IEA] GO_function : GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0008396 - oxysterol 7-alpha-hydroxylase activity [Evidence IDA]; GO:0008387 - steroid 7-alpha-hydroxylase activity [Evidence IDA] GO_process : GO:0006699 - bile acid biosynthesis [Evidence IDA] [Evidence TAS]; GO:0030573 - bile acid catabolism [Evidence IEA]; GO:0006707 - cholesterol catabolism [Evidence IDA]; GO:0007586 - digestion [Evidence TAS]; GO:0006118 - electron transport [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0008202 - steroid metabolism [Evidence IEA] codon_start : 1 note : oxysterol 7alpha-hydroxylase; cytochrome P450, 39a1 (oxysterol 7alpha-hydroxylase); oxysterol 7-alpha-hydroxylase product : cytochrome P450, family 39, subfamily a, polypeptide 1 protein_id : NP_061375.1

name	Dscr1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46560587 CCDS:CCDS28800.1 GeneID:53901 MGI:1858219
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0019722 - calcium-mediated signaling [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; myocyte-enriched calcineurin interactin protein 2 product : Down syndrome critical region gene 1-like 1 isoform 1 protein_id : NP_997532.1

name	Dscr1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13447392 CCDS:CCDS28801.1 GeneID:53901 MGI:1858219
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0019722 - calcium-mediated signaling [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; myocyte-enriched calcineurin interactin protein 2 product : Down syndrome critical region gene 1-like 1 isoform 2 protein_id : NP_085101.1

name	Enpp5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14030779 CCDS:CCDS28802.1 GeneID:83965 MGI:1933830
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004551 - nucleotide diphosphatase activity [Evidence ISS] GO_process : GO:0009166 - nucleotide catabolism [Evidence ISS] codon_start : 1 product : ectonucleotide pyrophosphatase/phosphodiesterase 5 protein_id : NP_114392.1

name	Enpp4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84872231 CCDS:CCDS28803.1 GeneID:224794 MGI:2682634
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0009117 - nucleotide metabolism [Evidence IEA] codon_start : 1 product : ectonucleotide pyrophosphatase/phosphodiesterase 4 protein_id : NP_950181.2

name	Clic5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369886 CCDS:CCDS28804.1 GeneID:224796 MGI:1917912
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence ISS]; GO:0005626 - insoluble fraction [Evidence ISS]; GO:0005902 - microvillus [Evidence ISS] GO_function : GO:0005254 - chloride channel activity [Evidence IEA]; GO:0031404 - chloride ion binding [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0005244 - voltage-gated ion channel activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : chloride intracellular channel 5 protein_id : NP_766209.1

name	Runx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20806530 GeneID:12393 MGI:99829
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence TAS] GO_process : GO:0048469 - cell maturation [Evidence IMP] [Evidence IGI]; GO:0002062 - chondrocyte differentiation [Evidence IGI]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0001649 - osteoblast differentiation [Evidence IGI] [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI] [Evidence IDA]; GO:0040036 - regulation of fibroblast growth factor receptor signaling pathway [Evidence IMP]; GO:0042487 - regulation of odontogenesis (sensu Vertebrata) [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0001501 - skeletal development [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : AKV core binding factor; polyomavirus enhancer binding factor 2 (PEBP2); core binding factor alpha 1; testicular RUNX2 isoform; PEBP2 alpha A; SL3-3 enhancer factor 1; runt domain, alpha subunit 1 product : runt related transcription factor 2 protein_id : NP_033950.1

name	Supt3h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520009 GeneID:109115 MGI:1923723
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] codon_start : 1 product : suppressor of Ty 3 homolog protein_id : NP_848767.1

name	4930564C03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51770289 GeneID:75341 MGI:1922591
definition	codon_start : 1 product : hypothetical protein LOC75341 protein_id : XP_484637.1

name	EG210562 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38082562 GeneID:210562 MGI:3649016
definition	codon_start : 1 product : hypothetical protein protein_id : XP_140033.3

name	Cdc5l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22779899 GeneID:71702 MGI:1918952
definition	GO_component : GO:0005681 - spliceosome complex [Evidence IEA] GO_function : GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : cell division cycle 5-like protein_id : NP_690023.1

name	Spats1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789205 GeneID:71020 MGI:1918270
definition	codon_start : 1 exception : mismatches in translation note : Dvl2-DEP domain interacting protein product : spermatogenesis associated, serine-rich 1 protein_id : NP_081925.1

name	EG668319 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94402002 GeneID:668319 MGI:3645365
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001004126.1

name	Aars2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:52630311 CCDS:CCDS28809.1 GeneID:224805 MGI:2681839
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : alanyl-tRNA synthetase like protein_id : NP_941010.2

name	Tcte1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430564 GeneID:21645 MGI:98640
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : t-complex-associated testis expressed 1 protein_id : NP_038716.2

name	Gm323 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701444 CCDS:CCDS28810.1 GeneID:210573 MGI:2685169
definition	codon_start : 1 product : hypothetical protein LOC210573 protein_id : NP_001013771.1

name	Nfkbie (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543321 CCDS:CCDS28811.1 GeneID:18037 MGI:1194908
definition	codon_start : 1 product : nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon protein_id : NP_032716.2

name	Slc35b2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625963 GeneID:73836 MGI:1921086
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_process : GO:0006810 - transport [Evidence IEA] codon_start : 1 note : solute carrier family 35, member B1 product : solute carrier family 35, member B2 protein_id : NP_082938.1

name	Hsp90ab1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40556608 CCDS:CCDS28812.1 GeneID:15516 MGI:96247
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0030235 - nitric-oxide synthase regulator activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0030911 - TPR domain binding [Evidence ISS]; GO:0051082 - unfolded protein binding [Evidence ISS] [Evidence IEA] GO_process : GO:0045429 - positive regulation of nitric oxide biosynthesis [Evidence ISS]; GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]; GO:0006986 - response to unfolded protein [Evidence IEA] [Evidence ISS] codon_start : 1 note : heat shock protein, 84 kDa 1; heat shock 90kDa protein 1, beta product : heat shock protein 1, beta protein_id : NP_032328.2

name	EG668314 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668314
definition	number : 1 pseudo : _no_value

name	EG668314 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668314
definition	number : 2 pseudo : _no_value

name	EG668314 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668314
definition	number : 3 pseudo : _no_value

name	EG668314 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:668314
definition	number : 4 pseudo : _no_value

clone name	MSMg01-547P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-503L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-101K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-514J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-393M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-152C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-385H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-385H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347F11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300K06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140C02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524I23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189P19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-276O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-212H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296H06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-051H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052H20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-481L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119F16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-147I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-126E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-334C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-085L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313I01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-439I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418L16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-420C07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-099F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061C23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-440G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-341J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542O10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398N19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-298E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-121P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-097J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-296D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-444P14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007G24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259E11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-269G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110A23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029F21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111J10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-005M01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-082O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210D11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114A06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094F23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287P12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011E03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-203C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267B14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037F18
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-481L03.T7 (MSMg01no481_l03.b1)	MSMg01-481L03.TJ (MSMg01no481_l03.g1)
ACC	AG562040	AG562041
length	799	1,205
length of high quality (start - end)	169 (69 - 237)	---
definition	CHROMAT_FILE: MSMg01no481_l03.b1 PHD_FILE: MSMg01no481_l03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:25 2005	CHROMAT_FILE: MSMg01no481_l03.g1 PHD_FILE: MSMg01no481_l03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:02:25 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TTGGCGGGCGCTATACGACGCCTAGAGTTTCAAATCCGCGGAATTCACCT TGTGAGTTTCCTTTAGAAATCTGCCTATTCTGTCTGATACTCTCCCCCGA CTCCACTCACGCACGCCCACTCTGCCCCCTGCTCTGTGGCTCTGTAACGT TACATAGGATTTATTTAAGGGTGAATTTCTTTCATAGGTTTTTTTTTTGT TTTTTGTTTTTTGTTTTTTTTTTTTTAAACTTGGTATGTTNCNNCCAAGC CTTTTTCTTCCATTTCTTGGTGGTTGGCTTGGGTGGTCCCTTGGAATAAA CGTCTGGGAGATTTTCTCTGTCATATCTAANNNNNNTTTTAAAAATAAAA TATCCCGTTTTTCCCCCCTTCCATTTTTCCCCCGAACTGGTTCCTTAAAT AAANNTTTTTTTTTTCTTTCTTCTCTCTCTCTCCTGTTACTCCCATCTTT TTCGGTTTTGTTTTATCCCTGTCTATACTTATTTCTCTACCCTCATTTTT TTTTTTTTCTCTCTTCTTTCTTCCCCTTTATCGTCTTCTTTCTTTTTTTT TCTCCCCTTTTTTTCTCTTTTTTGTGTTAGTGGTGGTTCTACCTTTATTA TAATTTTAATTGAATATGTCTTTGACTACTACTTTGTTTATTTTCTTTTT TTTTTTCCCCCTTTCTTTAAACAACACTATTTTTTTTTTTAATTTTTTTT TTTTTTTTTTTGGTGTGTCTCGCTCTCTCCTCTTCTCTTTCTTTTTATCC TCTTTTTGTTTATTGGTTTCCTTTTCCCTCCCTCCATTCTCACCCTTCT	TGTATAGATAAGGTGTTTCTTGTGCGTGTTCCTATCCGCGACCCAGGAGT GGAGCGGCAGTTAGATCGGCTAGTATCTTGTCGGCGCGCGGTTTAGGGCG TAGCGCTACGAGGATTAACAATACGAATGCTGACTCAATGAGTTATGTTG TTGTATAAATAGCGAATAGCTATCGGCTTTGAAGTGTATAGAAGAAATAC ACGGTGGCGATACGCACCACGACGGGCACACCATAGGACATTATATAAAA TTCGCACTCACATCTCTCTTGATTTTCTCACCCAACGTGGCCCACTTTCT TGCAGGCGAGTACCGTCGGTATACATGCCCGGTCGCGACGGGCGTGTGCG AGTTGTGGTAGTTCCGCCGCTGTTCCCGCAAGTTATAACGTTAGAATTTC TGATTTCACGCATGGAGAGAGGCGCGGCTCGCTCTGGTCGTTTACTGTCC GGAGATTGCCGCTCGCTCCTTGTCTATGCCAAATCTCCGACCCGTTTCAT AGAGTGTGAGTTTGGCGCACGTGGAAGGTGTGAATACCGCGAAATAAGCG ACAAGGACGAGATAATATAGATAACTAGATAACGATAGAATAACACATCG TATATATGAATCTACGGACGAGAGCGTAAGAGCATACTATTGTATGTTTC CTTAGCTTTGCTGCTTACTCCCGCTGTAGGACATGTCTGGTACTGTACCT GATGAATCGAACGCTATGACGGATGGCCTGACGGACTGCGCTCTTTTTCT CTTCACCAGCCTCCTTGTACCCATACCATGCACTGCATAGATATTCGCTA AGAGATTGAGACGTATGGGTAATACACTCCAAGCTAACCAGTCGTATGCG ATCATGTAGTCTTCGTGCGCTCTGCACAACGAACAAAAGTAGTAGATATA TTGTGTGCCGGCGCGCGTGCAACGGCTGCTAGAGATATATGGTGTTTCAG AGTCATCGGTATTCGCAGTAGCTCGATATACCGTTCGCTGCGATGTTGTA AGTTAGCTAGCAATGATATCACGTCAATCATCAACCACACAATTATCTTG TACGTCCTCCACTCGCTGTCTTGCGTGTTGTACATGCTTATCGACCACTC TACCACATCAATTATCCGCTATATAGTTACCTCGATCAATAATCATCGTA ACGTCGTTTCAAGATCCGATATCGCGCACCGCGTGCGCGTGGTTGCATCT GTTTG
quality values	Open. Hide. 8 8 8 8 8 8 10 20 28 26 18 18 12 12 9 10 9 13 10 8 8 8 8 8 9 9 9 7 10 8 6 6 8 8 8 10 10 22 22 24 27 27 31 31 32 29 19 19 24 25 33 29 29 9 9 9 9 11 11 11 12 12 18 18 9 9 9 9 19 22 33 33 47 50 50 59 53 53 57 57 57 57 57 57 53 53 53 53 53 53 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 48 48 47 47 47 47 47 48 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 37 37 37 43 42 48 41 42 42 50 57 68 68 68 68 68 68 68 68 68 50 51 51 51 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 68 68 68 68 54 54 54 54 54 57 59 57 57 57 57 57 59 59 57 57 32 30 15 26 28 43 59 59 59 59 47 43 41 41 41 47 47 59 59 59 41 34 16 16 8 8 8 3 0 3 0 0 3 14 15 23 12 9 9 12 9 9 10 10 10 14 14 10 10 22 18 16 17 10 9 9 11 11 13 10 10 10 9 9 10 11 15 19 22 27 20 15 10 10 6 6 8 7 12 22 16 18 15 16 18 12 8 10 8 8 8 8 21 13 14 10 8 8 6 8 8 9 12 14 14 10 10 8 8 8 8 10 10 10 13 12 9 3 0 0 0 0 0 0 3 8 10 11 9 10 9 9 8 8 8 12 12 12 12 11 11 11 11 8 10 8 8 14 15 17 18 18 25 9 7 8 8 8 6 8 9 9 11 22 22 25 28 24 22 14 13 10 9 10 10 9 9 9 12 6 6 6 6 8 6 6 6 6 6 8 3 0 0 3 12 15 24 16 13 13 8 15 8 8 8 8 13 11 12 10 10 10 10 10 16 15 12 10 8 6 6 6 6 7 8 8 10 10 9 8 8 8 8 8 10 13 18 11 8 8 8 8 8 8 10 9 9 9 9 13 8 8 8 8 8 8 10 12 11 11 11 11 8 8 6 6 8 8 10 9 9 9 6 8 6 6 6 8 9 9 10 9 9 10 10 10 10 13 19 19 11 11 10 10 8 10 8 8 8 11 10 10 8 9 10 15 12 14 12 16 12 9 10 9 8 7 6 6 8 8 11 12 8 10 8 8 8 8 8 8 8 10 13 17 16 25 24 18 10 10 10 13 11 14 11 12 13 12 9 8 8 8 13 10 10 12 20 11 12 6 6 6 6 8 8 8 6 6 6 8 8 8 8 8 8 10 8 8 8 8 8 8 10 16 10 8 8 6 6 8 8 12 12 15 10 10 8 8 8 8 8 8 8 9 9 9 11 12 11 11 9 6 6 6 6 8 6 6 8 8 8 10 10 12 8 8 15 8 8 10 15 16 13 10 10 10 10 13 12 9 10 8 10 10 11 11 22 22 30 23 18 9 11 8 8 8 8 8 6 6 8 6 6 8 8 8 10 12 11 10 8 7 8 8 18 13 12 10 8 8 8 8 8 8 13 19 28 31 23 23 23 20 23 23 13 11 8 8 8 8 9 8 8 8 8 8 8 9 9 8 8 10 10 13 13 12 12 14 12 8 8 8 7 7 12 10 8 8 8 10 12 12 9 9 8 8 8 8 8 8 8 8 10 12 6 6 6 10 8 8 8 8 8 8 8 8 8 9 9 12 10 9 8 8 11 9 11 9 8 8 11 10 8 8 8 8 8 8 8 8 8 10 8 10 8 8 8	Open. Hide. 9 9 9 9 9 8 10 9 9 8 6 8 6 6 8 10 15 8 8 8 8 8 8 8 8 8 9 9 10 10 10 10 10 10 10 8 10 8 6 6 6 9 9 10 10 11 13 13 10 10 9 10 10 10 10 9 9 9 10 11 13 14 9 9 10 12 18 19 8 8 8 6 6 6 6 10 11 11 11 10 10 13 18 13 12 13 10 9 9 9 8 8 8 6 8 6 9 9 11 12 9 8 8 6 6 6 6 6 8 8 8 8 9 10 10 9 9 9 8 8 8 8 8 8 8 8 8 8 8 8 9 11 13 10 9 8 8 8 8 8 8 11 11 10 9 10 15 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 6 8 8 8 6 6 8 8 9 10 12 10 10 6 6 6 7 10 9 7 8 8 12 12 10 10 12 13 10 10 9 9 8 8 8 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 8 8 8 9 9 8 8 8 10 8 10 8 8 8 8 9 8 8 8 8 8 8 8 8 7 6 8 8 12 11 10 8 8 6 6 6 6 8 8 10 8 9 10 8 8 6 8 8 8 7 7 6 8 8 8 6 7 8 8 9 9 10 10 8 8 8 8 10 10 10 10 8 8 8 8 8 8 8 8 6 6 8 8 9 10 10 8 8 8 8 8 8 11 10 11 10 10 9 8 8 6 6 8 8 10 10 10 8 8 6 6 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 6 7 8 8 6 6 6 8 8 9 9 8 8 8 8 8 8 10 10 10 10 11 11 8 8 8 8 8 8 9 9 8 8 6 7 7 7 9 8 8 8 6 6 7 8 8 8 8 8 8 8 8 8 8 8 6 6 6 7 8 8 10 14 14 10 13 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 10 10 10 8 8 8 8 8 8 10 8 8 7 7 8 8 8 6 6 8 6 8 8 8 8 8 10 8 8 8 8 8 6 8 8 10 8 8 6 6 10 8 10 10 11 11 10 8 8 8 10 10 10 10 10 11 11 11 8 8 6 6 8 8 10 10 8 10 11 8 8 8 8 8 9 10 9 9 9 9 9 11 9 8 8 8 8 10 8 8 7 7 7 8 8 6 6 6 6 8 8 9 8 8 8 8 8 8 8 8 6 6 6 8 8 10 10 10 10 7 7 8 8 8 8 10 8 8 6 6 8 10 9 9 10 8 8 6 6 6 6 10 11 8 8 8 8 6 6 12 8 6 6 6 6 9 13 13 10 9 8 8 8 10 9 9 9 9 6 10 6 6 8 8 8 8 6 8 6 6 8 6 6 6 8 8 8 8 8 8 8 6 6 6 6 8 6 10 10 10 10 15 11 8 8 8 8 8 8 8 9 10 8 8 8 6 6 8 8 6 6 6 6 8 8 6 8 6 6 6 6 8 8 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 10 8 8 8 8 9 9 11 9 9 9 8 8 8 8 8 8 10 9 9 8 8 6 6 6 6 8 8 9 8 15 14 10 10 8 8 12 25 16 14 12 12 11 11 8 8 8 8 8 8 9 10 10 11 11 16 15 13 10 10 6 6 8 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 11 10 8 8 10 8 8 8 8 11 8 8 8 8 8 8 8 8 9 8 8 8 8 8 8 8 8 8 6 6 6 9 8 8 6 6 6 6 8 8 8 8 8 8 10 11 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 12 10 11 11 8 8 8 8 12 8 8 8 8 8 11 8 8 6 7 10 8 8 7 9 8 8 10 10 8 8 8 6 6 6 6 8 6 9 10 13 14 9 9 9 9 8 8 8 8 8 8 8 8 8 8 6 6 6 6 8 8 8 8 6 6 6 8 8 9 10 10 10 9 9 8 8 8 8 10 6 6 6 6 8 8 10 9 9 6 6 6 6 8 6 6 6 6 8 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 6 6 8 8 10 10 13 16 11 11 11 13 10 7 7 7 9 9 9 10 8 8 8 8 10 10 8 8 8 8 8 10 8 8 8 9 9 9 12 11 6 6 6 6 6 6 6 6 8 8 8 8 8 6 6 6 6 9 9 8 8 8 6 6 8 8 10 10 10 8 6 6 7 6 6 6 6 8 6 6 6 8 9 9 8 8 6 6 6 6 6 8 6 9 10 10 10 10 10 8 9 9 9 10 10 8 8 8 8 8 8 10 8 8 8 8 8 8 9 9 8 6 6 6 8 8 8 8 8 8 10 8 7 7 8 8 10 8 8 8 8 8 9 8 12 7 7 7 8 9 9 13 10 9 9 8 8 8 8 8 8 8 6 6 8 8 10 6 6 8 6 8 8 8 8 8 10 8 8 8 8 10 8 6 6 10 8 8 6 6 6 8 9 8 6 6 6 6 6 13 16 20 20 10 10 6 6 8 8 8 8 8 8 8 9 9 9 10 8 8 6 6 8 8 6 6 8 6 6 6 8 6 6 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no481_l03.b1 MSMg01no481_l03.b1 CHROMAT_FILE:
MSMg01no481_l03.b1 PHD_FILE: MSMg01no481_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:25 2005
         (169 letters)



>mm_chr17_44711708_44712276
          Length = 569

 Score =  250 bits (129), Expect = 5e-71
 Identities = 135/137 (98%), Gaps = 1/137 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgcctattctgtctgatactctcccccgactccactcacgcacgcccactctgcccc 60
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atctgcctattctctctgatactctcccccgactccactcacgcacgcccactctgcccc 261

                                                                       
Query: 61  ctgctctgtggctctgtaacgttacataggatttatttaagggtgaatttctttcatagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgctctgtggctctgtaacgttacataggatttatttaagggtgaatttctttcatagg 201

                            
Query: 121 ttttttttttgtttttt 137
           |||||||||| ||||||
Sbjct: 200 tttttttttt-tttttt 185


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information