Query= MSMg01no481_p05.b1 MSMg01no481_p05.b1 CHROMAT_FILE:
MSMg01no481_p05.b1 PHD_FILE: MSMg01no481_p05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:45 2005
(600 letters)
>mm_chr17_31034615_31035614
Length = 1000
Score = 1052 bits (544), Expect = 0.0
Identities = 576/600 (96%), Gaps = 21/600 (3%)
Strand = Plus / Plus
Query: 1 cagccagctcacacctatctctaactctggctccagcaggtccttgaacaaccccccccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagccagctcacacctatctctaactctggctccagcaggtccttgaacaaccccccccc 260
Query: 61 aacacacacccaaacaaaaatctttataatactgcctctctgaaaacatcctcacagaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacacacacccaaacaaaaatctttataatactgcctctctgaaaacatcctcacagaca 320
Query: 121 tatgaaattatttctaggtgtttctgaagccagacatgttgacaagattaatcacaacag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgaaattatttctaggtgtttctgaagccagacatgttgacaagattaatcacaacag 380
Query: 181 gcagattgctatgaacaggggacctgacactttaggagctacagagatgagtcctcccaa 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gcagattgctatgaacaggggacctgacactttaggagctgcagagatgagtcctcccaa 440
Query: 241 gtgccccatggactcttatgggaaatagccatggctgcaaaagtgcagaggaccagagtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgccccatggactcttatgggaaatagccatggctgcaaaagtgcagaggaccagagtc 500
Query: 301 tcacctatcattctgagacagaaactggaaggaaccacattaggggcagaagtatgctgt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 tcacctatcattctgagacagaaactggaaggaaccacattaggggcagaagtatgctat 560
Query: 361 gctaaaagtttgcatctggaccccaccttcccagatgttgctaagtcccatggtgatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctaaaagtttgcatctggaccccaccttcccagatgttgctaagtcccatggtgatgtt 620
Query: 421 gttcagtcccagggtgatgttgctaagtcccagggtgattttgctaagtcccagggtgat 480
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttaagtcccagggtgatgttgctaagtcccagggtgattttgctaagtcccagggtgat 680
Query: 481 gttgctaagtcccagggtgatgttgctaagtcccagggcgatgttgctaacaagtcccag 540
||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 gttgctaagtcccaggg---------------------cgatgttgctaacaagtcccag 719
Query: 541 ggtgatgcacactgagatgagaggtagcatcacagcacacagagaaacttctggatcctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggtgatgcacactgagatgagaggtagcatcacagcacacagagaaacttctggatcctc 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no481_p05.g1 MSMg01no481_p05.g1 CHROMAT_FILE:
MSMg01no481_p05.g1 PHD_FILE: MSMg01no481_p05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:02:45 2005
(415 letters)
>mm_chr17_31207111_31207925
Length = 815
Score = 733 bits (379), Expect = 0.0
Identities = 408/419 (97%), Gaps = 5/419 (1%)
Strand = Plus / Minus
Query: 1 ttccttgctaaaggaagtgagtccctccttccccc-tccccccttaaaacctgagaaccc 59
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 569 ttccttgctaaaggaagtgagtccctcc-tcccccttccccccttaaaacctgagaaccc 511
Query: 60 atcaccagtctcagggctctctgaagcctttcttttccgggctgggctcccctccccatc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 atcaccagtctcagggctctctgaagcctttcttttccgggctgggctcccctccccatc 451
Query: 120 tccaatcttgggcatttggttgaagtccaagtttcctaatggaattcctgaaaggggctt 179
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tccgatcttgggcatttggttgaagtccaagtttcctaatggaattcctgaaaggggctt 391
Query: 180 atttaatagcagagtccactcatttttagccagcctgtaatgacaggccttgtgaaaggg 239
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atttaatggcagagtccactcatttttagccagcctgtaatgacaggccttgtgaaaggg 331
Query: 240 cggtggaaattaagagaaagcaaaccttaatttgagaagggtcttgggtgttcaacggcc 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 330 cggtggaaattaagagaaagcaaaccttaatttgagaagggtgttgggtgttcaatggcc 271
Query: 300 ttttataactcagaagcaagccaatacacataatctggcttggagctgatcaagctgctt 359
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 270 ttttataacccagaagcaagccaatacacataatctggcttggagctgatcaggctgctt 211
Query: 360 aacgccttcc---tgttgttgttgttgttgttgttgttgttgttgttttgggggggagg 415
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 aacgccttcctgttgttgttgttgttgttgttgttgttgttgttgttttgggggggagg 152
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
