BAC Information

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BAC

Clone NameMSMg01-482D22
Chromosome17 (Build37)
Map Location 21,691,824 - 21,692,490
singlet/doubletsinglet
Overlap geneZfp52
Upstream geneEG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik, Zfp54, Zfp51, Zfp53, LOC100042508
Downstream geneBC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-482D22.T7 (MSMg01no482_d22.b1)MSMg01-482D22.TJ (MSMg01no482_d22.g1)
ACCAG562456AG562457
length722746
length of high quality
(start - end)		658 (36 - 693)665 (75 - 739)
definitionCHROMAT_FILE: MSMg01no482_d22.b1 PHD_FILE: MSMg01no482_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:07 2005CHROMAT_FILE: MSMg01no482_d22.g1 PHD_FILE: MSMg01no482_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:03:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACT
GTTTAGAAACCCTACAAGTGCAACCTTTGTGACAAATCTTTTTCCCAGAG
CACAACTCTTAAAACACATCAAAGACTTCATACTGGGGAGAAGCCTTACA
AATGCAGAGAATGTGGAATGTCGTTTCCTTACTTGTCATCCCTTAAAGTC
CATCAGAATTTGCATCCTGGAGCGAAGCCATACAAATGTAAGGAATGTGA
CAAATCCTTTACTATAAAGTCAACTCTTATAAAACATCAGAGAAATCATA
CTGGAGAGAAACCCTACACGTGCAATGTTTGTGACAGATCCTTTAGACAA
TGTGCAAATCTTAAAACACACCAAAGACTTCATACAGGAGAAAAACCTTA
CAAGTGCAAGGAATGTGGAAAGGCATTTACTCAGTCCTCATCCCTTAAAA
AACATCTGAATTTGCATACTGGAAAGAAACCTTACAAATGTGAGGAATGT
GACAAATCTTTTACGGAGAAGTCAACACTTACAACGCATAAAAGAATTCA
TACTGGAAAGAAACCCTATAAGTGCAACATTTGTGGCAAATCTTTTAACA
GTTGTACAAATCTTAAAACACATCAAACACTTCATACTGGGGAGAAACCT
TACAAGTGCAAGGAATGTGGAAAGGCATTTCCTTACATGTCATCCCTTAA
AATACATCAGAATTTGCATCCT

CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCACATAATTCTACACAATGAGTCCAA
GCCCAAGTGTATGCATGTGGGACACAAAAAAAGAGTAAATGAAAAGGAGT
AAAAATACTGATCTCTCTTTCAGAAATAACCAAGATTGTAATTCTCCTGG
GATAAAGAGATATGAAGTGCCAACACACATGTAGACACATCGCCACCATC
ATGATTTAAATACCAAAGAGAAAGACAAGTAGAATATAATCTCAGTTTAC
ACTCAAGATCATCCGTTTCATGGATGTAATGACCACTCATTATGAAAAAG
GACATAAAGGTAATTGCTTTTCTTGTTCTAATTCCTTCACAGGTTTTTGG
GGTTTGGTGGTGAATCAGTTCATAAAGATAAATTTTTAAAACATCATCAG
AAGCAGAAAATTTAAGGTTTGCAATATATCAAACTATAATATTTTCAGAA
TGAAAGTGGACATGACCACTGACCTGGGATGTGTTTACTGGAGAATTGGC
CATTTCTTCCTGTTTCTCTTCTTTGATTTTCTCTTTGAATAACAATGAAT
AGCCAGATTGTGGTCTTTAATACCAAGGGGTCAAAGAGAAAAAGTAAAAT
TAATACTGAATTCTTTTAAAGAACAATGTCACACCACAAGAAAAGACCCA
AGNCATAGAAAAAAACCTCGACTCTGGTCAATGACCCAAAGCCAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no482_d22.g1 MSMg01no482_d22.g1 CHROMAT_FILE:
MSMg01no482_d22.g1 PHD_FILE: MSMg01no482_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:03:07 2005
         (665 letters)



>mm_chr17_21691624_21692690
          Length = 1067

 Score = 1224 bits (633), Expect = 0.0
 Identities = 658/668 (98%), Gaps = 4/668 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacataattctacacaatgagtccaagcccaagtgtatgcatgtgggacacaaaaaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 867 cacataattctacacaatgagtccaagcccaagtgtatgcatgtgggacac-aaaaaaga 809

                                                                       
Query: 61  gtaaatgaaaaggagtaaaaatactgatctct---ctttcagaaataaccaagattgtaa 117
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 808 gtaaatgaaaaggagtaaaaatactgatctctctactttcagaaataaccaagattgtaa 749

                                                                       
Query: 118 ttctcctgggataaagagatatgaagtgccaacacacatgtagacacatcgccaccatca 177
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 748 ttctcctgggataaagagatatgaagtgccaacacacatgtagacacatcaccaccatca 689

                                                                       
Query: 178 tgatttaaataccaaagagaaagacaagtagaatataatctcagtttacactcaagatca 237
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 688 tgatttaaataccgaagagaaagacaagtagaatataatctcagtctacactcaagatca 629

                                                                       
Query: 238 tccgtttcatggatgtaatgaccactcattatgaaaaaggacataaaggtaattgctttt 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tccgtttcatggatgtaatgaccactcattatgaaaaaggacataaaggtaattgctttt 569

                                                                       
Query: 298 cttgttctaattccttcacaggtttttggggtttggtggtgaatcagttcataaagataa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 cttgttctaattccttcacaggtttttggggtttggtggtgaatcagttcataaagataa 509

                                                                       
Query: 358 atttttaaaacatcatcagaagcagaaaatttaaggtttgcaatatatcaaactataata 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 atttttaaaacatcatcagaagcagaaaatttaaggtttgcaatatatcaaactataata 449

                                                                       
Query: 418 ttttcagaatgaaagtggacatgaccactgacctgggatgtgtttactggagaattggcc 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ttttcagaatgaaagtggacatgaccactgacctgggatgtgtttactggagaattggcc 389

                                                                       
Query: 478 atttcttcctgtttctcttctttgattttctctttgaataacaatgaatagccagattgt 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 atttcttcctgtttctcttctttgattttctctttgaataacaatgaatagccagattgt 329

                                                                       
Query: 538 ggtctttaataccaaggggtcaaagagaaaaagtaaaattaatactgaattcttttaaag 597
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggtctttagtaccaaggggtcaaagagaaaaagtaaaattaatactgaattcttttaaag 269

                                                                       
Query: 598 aacaatgtcacaccacaagaaaagacccaagncatagaaaaaaacctcgactctggtcaa 657
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 268 aacaatgtcacaccacaagaaaagacccaagcaatagaaaaaaacctcgactctggtcaa 209

                   
Query: 658 tgacccaa 665
           ||||||||
Sbjct: 208 tgacccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1067
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1057
Effective search space:   692335
Effective search space used:   692335
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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