Query= MSMg01no484_f17.b1 MSMg01no484_f17.b1 CHROMAT_FILE:
MSMg01no484_f17.b1 PHD_FILE: MSMg01no484_f17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:53 2005
(668 letters)
>mm_chr17_38957813_38958880
Length = 1068
Score = 1226 bits (634), Expect = 0.0
Identities = 659/670 (98%), Gaps = 6/670 (0%)
Strand = Plus / Plus
Query: 5 gaattcatgaaattcctaggcaaatggatggaactcgaaaattgattgttaagagctcaa 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattcatgaaattcttaggcaaatggatggaactcgaaaattgattgttaagagctcaa 258
Query: 65 tgggggctttttggggaatttgaaattttaaatataatcatgtagattagtgtgcaatat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgggggctttttggggaatttgaaattttaaatataatcatgtagattagtgtgcaatat 318
Query: 125 aaaattttagcttctgaagattcatagggaagttcaagactctgtatggcatatattcac 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 319 aaaattttagcttctgaagattcatagggaagttcaagactctgtagggcatatattcac 378
Query: 185 acacacacacacacacacacacacacacacacac----tcacacacacacacacacacac 240
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 379 acacacacacacacacacacacacacacacacacactctcacacacacacacacacacac 438
Query: 241 acacacata--tattaattaacttccaaattaaaggttttcataagcttatttagcaatc 298
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acacacacacatattaattaacttccaaattaaaggttttcataagcttatttagcaatc 498
Query: 299 cttagtttggttacctcaatgtgtaccacatatttcctccttcttgaaccaaaccattct 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cttagtttggttacctcaatgtgtaccacatatttcctccttcttgaaccaaaccattct 558
Query: 359 tgaaatatcaatccctattataccctcaattctttcataccatgtgcattctacacctat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgaaatatcaatccctattataccctcaattctttcataccatgtgcattctacacctat 618
Query: 419 attttattattttcactgatttcaaggtttcagtattcaatatcattttcccattctgca 478
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 619 attttattattttcactgatttcaaggtttcggtattcaatatcattttcccattctgca 678
Query: 479 tttaagttgtcttttccttccctttctttcacctctctttttctttttgtactgttctgc 538
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 679 tttaagttgtcttttccttccctttctttcacctctcttttactttttgtactgttctgc 738
Query: 539 atcaataggttccctctccaaattacttttacacatattctagtatcccacatttattaa 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcaataggttccctctccaaattacttttacacatattctagtatcccacatttattaa 798
Query: 599 tgaatatcctgccaacataatgtttataataaattggcttcctccacattatattaatca 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 tgaatatcctgccaacataatgtttataataaattggcttcctccacattatattaatca 858
Query: 659 aaacataata 668
||||||||||
Sbjct: 859 aaacataata 868
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 130
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no484_f17.g1 MSMg01no484_f17.g1 CHROMAT_FILE:
MSMg01no484_f17.g1 PHD_FILE: MSMg01no484_f17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:53 2005
(670 letters)
>mm_chr17_39143858_39144923
Length = 1066
Score = 895 bits (463), Expect = 0.0
Identities = 504/520 (96%), Gaps = 4/520 (0%)
Strand = Plus / Minus
Query: 151 cagatgtggaagcatttttgaattttgggctagaaatttattgcgtgttgagagctcagt 210
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct: 1066 cagatgtggaagcatttttgaattttgggcttgaaatttattgcgcgttgagagctcagt 1007
Query: 211 aggggtttggtaggaaactgaaatataaccatattgagagtagtatacaacatagaattt 270
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1006 aggggtttggtaggaaactgaaatataaccatattgagagtagtatacaacgtagaattt 947
Query: 271 tggcttatgaagtttcaatgagaagttaaagacttgtagggcatctattcacaattaaaa 330
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 tggcttatgaagtttcaacgagaagttaaagacttgtagggcatctattcacaattaaaa 887
Query: 331 ttatatatacatatatatatcacttccaaaaaactaggttttcataggcttatttagcaa 390
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 886 ttatatatacatatatatatcacttccaaaaaactaggttttcacaggcttatttagcaa 827
Query: 391 tccttagtttgcttacatcaatgtctatcacaccttccctacaccttcatgaaccagtcc 450
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 826 tccttagtttgcttacatcaatgtctat----ccttccctacaccttcatgaaccagtcc 771
Query: 451 ttttataataattaatccctgttataacatgagttctttcataccatgtgtgctctaaac 510
|||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 770 ttttataataattaatccctgttataacatgagttctttcatactatgagtgctctaaac 711
Query: 511 ctacattttattacttttactgattgcaaggttttaggattccatatcatttttacccat 570
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 ctacattttgttacttttactgattgcaaggttttaggattccatatcatttttacccat 651
Query: 571 tctgtatttaattagctttttccttctcatgtttcactgcatttttccattttgcagntt 630
|||| |||||||||||||||||||||||||||||| |||||||||||| |||||||| ||
Sbjct: 650 tctgcatttaattagctttttccttctcatgtttccctgcatttttcccttttgcagttt 591
Query: 631 tctgcacagacagaggccgtcttcaagttcgttttgcaca 670
||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 tctgcacagacagaggccgtcttcaagttcgttttgcaca 551
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1066
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1056
Effective search space: 696960
Effective search space used: 696960
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
