Query= MSMg01no485_a23.b1 MSMg01no485_a23.b1 CHROMAT_FILE:
MSMg01no485_a23.b1 PHD_FILE: MSMg01no485_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:52 2005
(625 letters)
>mm_chr19_3066324_3067349
Length = 1026
Score = 656 bits (339), Expect = 0.0
Identities = 565/661 (85%), Gaps = 45/661 (6%)
Strand = Plus / Plus
Query: 5 gaattcaaccacagtcctccagtatatccctcttagaaagagtagctggagcttctctat 64
|||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||| |
Sbjct: 171 gaattcaaccacagaactccactatatccctcttagaaagaatagctgtagcttctcttt 230
Query: 65 aaggcttgttatgatgaaggcttaatgattctcgctta-ggatgtgaga-------ggt- 115
|||||||||| | | ||| || |||||||| |||| || | ||||| |||
Sbjct: 231 aaggcttgtt--ggtctaggggta-tgattctcacttaagg-tctgagaagtcctgggtt 286
Query: 116 -----cttggatgagtcctcttcttttgtcaatcaaactgtgagaattagaagtcaaccg 170
|||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 287 caaagcttggacgagtcctcttcttttgccgatcaaactgtgagaattagaagtcaacct 346
Query: 171 tggctgcttagaaggtatgactaaacaaatgaaaacggaaatccgtaagtactcaaagtg 230
||||| |||||||| || ||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 347 tggctacttagaagataagactaaacaaatgaaaatggaaatatgtaagtactcaaagtg 406
Query: 231 g--------gttttgttgtt----gtt--gttgttgttgttgtt-gtt-------a---g 265
| ||||| ||||| ||| ||| ||||| ||||| ||| | |
Sbjct: 407 gctttttttgtttt-ttgttttttgttttgtttttgtttttgtttgttttttgtcattgg 465
Query: 266 tttgtttggactttgttttctgtttgaggcagcgtctcgctcctgtagctcaggctggtc 325
||| ||||||| |||||||||||||||||||| |||| |||| | |||||||||||||||
Sbjct: 466 tttatttggaccttgttttctgtttgaggcagggtctagctcatttagctcaggctggtc 525
Query: 326 ccgacaaagtcaaggatagctgcatttctaatcttcctgccttcacttcttgtgtgctgg 385
| |||||||||||||||||||||||| || |||||| |||||||||||||| ||| ||||
Sbjct: 526 ctgacaaagtcaaggatagctgcattcctgatcttcatgccttcacttcttctgtcctgg 585
Query: 386 aaatataggcatgtgtattaatctggtgttcaggttgaaaaccagggttaggcaagcaat 445
||||||| ||||||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct: 586 aaatatatgcatgtgtattaatccagtgttcaggttggagcccagggttaggcaagcaat 645
Query: 446 tagctgagctacagcatcagctcataactcaaaatgtccatcaagaatggctggcattat 505
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 646 tagctgagctacagcatcagctcataactcgaaatgtccatcaagaatggctggcattat 705
Query: 506 tcaaactaacctgatggataaaaataatgaaaaatgttggaat-aaaaaaaaatcaatcc 564
||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||
Sbjct: 706 tcaaactaacctgatggataaaaataatggaaaatattggaattaaaaaaaaatcaatcc 765
Query: 565 agctgccctggcaaagcagggagaactggagcaggcgtctgagatgcaccagcttctagt 624
||||||||||||||||||||||| | || ||||||| |||||||| ||||||||||||||
Sbjct: 766 agctgccctggcaaagcagggagcattgaagcaggcatctgagatccaccagcttctagt 825
Query: 625 c 625
|
Sbjct: 826 c 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1026
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1016
Effective search space: 624840
Effective search space used: 624840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no485_a23.g1 MSMg01no485_a23.g1 CHROMAT_FILE:
MSMg01no485_a23.g1 PHD_FILE: MSMg01no485_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:52 2005
(474 letters)
>mm_chr17_23809731_23810604
Length = 874
Score = 804 bits (416), Expect = 0.0
Identities = 425/428 (99%), Gaps = 1/428 (0%)
Strand = Plus / Minus
Query: 1 catgtcatccaatgctatatagttagaccctgactc-aaaaaaaaaaaaaaaagttcatc 59
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 428 catgtcatccaatgctatatagttagaccctgactcaaaaaaaaaaaaaaaaagttcatc 369
Query: 60 gtaattgtaaatgaggtgcccctccccctttaaacccagggtcttggtcttcataagaat 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gtaattgtaaatgaggtgcccctccccctttaaacccagggtcttggtcttcataagaat 309
Query: 120 gtgctctattatttagttacagctcagcccactgcttactggtgtgagacagtctcgtaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgctctattatttagttacagctcagcccactgcttactggtgtgagacagtctcgtaa 249
Query: 180 gtcttgaactttgttatatactggagaatgtccttgaacttctgttcttcctgccttcac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 gtcttgaactttgttatatactggagaatgtccttgaacttctgttcttcctgccttcac 189
Query: 240 ctccactgagtgctccaggctattgggtgtgctgcaaagcccaatatctacaatgctggt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 ctccactgagtgctccaggctattgggtgtgctgcaaagcccaatatctacaatgctggt 129
Query: 300 gctcaaacgctgagctttgagtaagaataggtttttgggtatggagagagagtggaggat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 gctcaaacgctgagctttgagtaagaataggtttttgggtatggagagagagtggaggat 69
Query: 360 ctgagctgggtgccagcactcaagttccaaagcttgtaattgcctgttaactcctgctac 419
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 68 ctgagctgggtgccagcactcaagttccaaagcttgtaattgcctgttaattccagctac 9
Query: 420 aggggagc 427
||||||||
Sbjct: 8 aggggagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
