BAC Information

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BAC

Clone NameMSMg01-485C13
Chromosome17 (Build37)
Map Location 76,265,245 - 76,265,779
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043672, Ltbp1, EG621988, Rasgrp3, 2810405J04Rik, LOC668787
Downstream geneLOC100043885, LOC100043886
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-485C13.T7 (MSMg01no485_c13.b1)MSMg01-485C13.TJ (MSMg01no485_c13.g1)
ACCAG564670AG564671
length1,212731
length of high quality
(start - end)
---649 (81 - 729)
definitionCHROMAT_FILE: MSMg01no485_c13.b1 PHD_FILE: MSMg01no485_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:00 2005CHROMAT_FILE: MSMg01no485_c13.g1 PHD_FILE: MSMg01no485_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:07:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTCTTAAATTATACGAGGACGGTAATAGAAAGGTCCATCACT
TTTCCCAAAGAAAAGGGGGGGGTAATCACATATAGTCTCTCTCCCTCCTG
GTCGTGTGCCTTCCTCCTAGTTGTATTATATTCTCGCCCCCCCCACTTCT
TTATCCCTTATTCACCTCGCGGAGTCTAGATTAGAGGGCGGTGTTTGGTT
GGGGTGTAGCGGATTGGTATAGGATGCACTGGTTGTGTGAGGAGTGTAAG
TTCTCTTCTTTACACTATATATCAAGTAAAGACTTATACCTGCTATTCGA
ACAACCCATGCATATACGCATTCTCCAGAAGATATCTTTTGTCGTTACGA
ACAGTACCTAGCGGGCCTATATTAATATTGGTGCGTCCGGCGGAGGTAGG
ATCCTTTTAGATGGCACGGGTGTTGTCGAGGTGGGAGGATGCAAGTGCAT
TTTCTTTATACCCCTCCCCTGCTACGCACATTTCTCCCCCGGATTGGTAA
AAGTCAGGAGGAGTAAATGATCATCAGCGGCCATGCTCCATCACGCAATT
TGTTTGTGGTTTATTTGATTCGCACACAACTCACTCCCGACCGCACAGAC
TCTTTAACTCTGTAGTATATTTAGTACTCGAGCACTTTTTAATCATGAAG
TAGCTGGATATATATTGATATATACCGGACCGTAGAGCGCGTCATGGACG
GCGGTGGTCTATCGCGTAGAATGTGGTGTGTTTTGATTAGCTAAGATCAT
TGTAACAGGCGGGAGTTATGCAGATGTCGGTCGCGCACCAGAAGAGTTTA
TACGCCTCCGTAGCTAACTGCAGTAGCGCCAGCATGAGATAATAACGCTC
CGGCAGGGAGCGCAGTCGTGGCTACGTGGACTGGTGATGTGTGTATGTGG
TCGAGTTTAGTTAAAGTATCAAATAAGTATGAGCTGACGAAGGCGAGCGG
CTGTCGTGTCTTGAGAGNCTCTCGTTAGTGATCATCCGGACGTCAATCAT
ATGCGTGTATAGTTACGCGGACGTTAGTCTGGTCGTTCGCTGTTAGTGTA
TGCAATATGTGACACATGGACCATTATTCAGACACACATTCTTGTATATT
ATGTCTCTTCTCGACAATATCATCGTATTTATAGTATCTGATCGTATATC
AATATCTCTGAGCAGAGACCCACGTTAGCGTCGGTTCACGTATTGTGTTG
CGCCNTCTGCTA
TTTTTGTCGATGCTAGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGAAGATAAGCATGAGGA
AATCATCTCAAGAACCCGAATTATTTTCCCTGCAGCACAGCCCAGTGTAC
GGAAGCTGAGAGACAAAGGTGCCAAAGAGAAATCCAGACTAAGGCTTTGA
GAAGTTAGGAAGTGTTATAATCTACCACGTAGTGCTGGAAAAAAAAACAA
ATGGAAATTAGAATACAAAAGAGCAAAAACTGCGATTTAAAGAAAAAGCC
ATTAAAAGCACATTTTAAAAATAGCATATACATAATGATTGGGCTTATTA
AAAATGTATGGAAGCTCGTGACAGAAAACTATAAAATGCTAGAAGACATT
AAAGAATGCCTAAATAACAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC
CAGGGCTATACAGAGAAACCCTGTCTCGAAACCCCCCCCCCCAAAAAAAG
CCTAAATAAGAAAAGAGGTAATGTTTATGAATTGAGAAACTCATGCCAAT
GTTCTCCACATTAATCTAAGGTTTAAATGTGATCCCAAACTCTTATCACT
ACGTTTCTTTCTATAGTATACAGAATCAGAGAAGTTGATTTAAAAGTGAG
TATGGATAAGAGCCAACAATGGCAATGACAAGCTGGATGATCTATGCAAT
CAAATATCAAGAATTATTATAAGCCATAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no485_c13.g1 MSMg01no485_c13.g1 CHROMAT_FILE:
MSMg01no485_c13.g1 PHD_FILE: MSMg01no485_c13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:07:00 2005
         (649 letters)



>mm_chr17_76265245_76266291
          Length = 1047

 Score =  808 bits (418), Expect = 0.0
 Identities = 500/544 (91%), Gaps = 33/544 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaagataagcatgaggaaatcatctcaagaacccgaattattttccctgcagcacag 60
           ||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| |
Sbjct: 535 agagaagataagcatgaggaagtcatctcaagaacctgaactattttccctgcagcacgg 476

                                                                       
Query: 61  cccagtgtacggaagctgagagacaaaggtgccaaagagaaatccagactaaggctttga 120
           |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ccca-tgtgcggaagctgagagacaaaggtgccaaagagaaatccagactaaggctttga 417

                                                                       
Query: 121 gaagttaggaagtgttataatctaccacgtagtgctggaaaaaaaaacaaatggaaatta 180
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 416 gaagttaggaagtgttataatctaccacgtggtgctgg-aaaaaaaacaaatggaaatta 358

                                                                       
Query: 181 gaatacaaaagagcaaaaactgcgatttaaagaaaaagccattaaaagcacattttaaaa 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 357 gaatacaaaagagcaaaaactgcgatttaaagaaaaaggcattaaaagcacattttaaaa 298

                                                                       
Query: 241 atagcatatacataatgattgggcttattaaaaatgtatggaagctcgtgacagaaaact 300
           |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 297 atagcaaatacataatgattgggcttattaaaaatgtatggaagctcatgacagaaaact 238

                                                                       
Query: 301 ataaaatgctagaagacattaaagaatgcctaaataacagcctggtctacaaagtgagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ataaaatgctagaagacattaaagaatgcctaaataacagcctggtctacaaagtgagtt 178

                                                                       
Query: 361 ccaggacagccagggctatacagagaaaccctgtctcgaaa--cc------------c-- 404
           |||||||||||||||||| ||||||||||||||||||||||  ||            |  
Sbjct: 177 ccaggacagccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaaaaaaacaa 118

                                                                       
Query: 405 -ccccccccaaaaaaa---gcctaaataagaaaaga----ggtaatgtttatgaattgag 456
            |       |||||||   |||||||||||||||||    ||||||||||||||||||||
Sbjct: 117 ac-------aaaaaaaaatgcctaaataagaaaagaagggggtaatgtttatgaattgag 65

                                                                       
Query: 457 aaactcatgccaatgttctccacattaatctaaggtttaaatgtgatcccaaactcttat 516
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 64  aaactcatgccaatgttctccacattaatctaaggtttcaatgtgatcccaaactcttat 5

               
Query: 517 cact 520
           ||||
Sbjct: 4   cact 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1047
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1037
Effective search space:   662643
Effective search space used:   662643
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)