BAC Information

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BAC

Clone NameMSMg01-486C15
Chromosome17 (Build37)
Map Location 56,626,112 - 56,626,438
singlet/doubletsinglet
Overlap genenone
Upstream geneSt6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592
Downstream geneZnrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486C15.T7 (MSMg01no486_c15.b1)MSMg01-486C15.TJ (MSMg01no486_c15.g1)
ACCAG565432AG565433
length1,418733
length of high quality
(start - end)		---328 (328 - 655)
definitionCHROMAT_FILE: MSMg01no486_c15.b1 PHD_FILE: MSMg01no486_c15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:23 2005CHROMAT_FILE: MSMg01no486_c15.g1 PHD_FILE: MSMg01no486_c15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATAGACACCCTGAGACACTATATCTCCCCCGGTGTGTTATTTTACCC
TTCACTATTCTATTTTCTTCTCTTAAGAAAAGACAGGTGGNGTATGCGCG
GATGTGTCGTCTTCTCTTCTCCCTTCACATCTTATCATGTTCGCTGTTAC
TATCTCACCGATCTACTTATACTTCAGGGCAAATAGATTAAGATTGGCTT
CGTGGCTATCTTACGCTCACTCATTCTTCTTTGCTCACTCACTACTCTCT
ATGATCTATCACTCCACCATTCCCACTCACTATCATGTGTACATATGAAT
NTTATCCNATAACTTAAGCTATTAAGTGTTCACAGAGCGAGGGAACGCTA
GCGATCACCATTCTCCCTTCAGTGCTCGCCTAGCGAGCCGCTCGCATCTC
CTTGAGTTATGTCTACTTAACCTTACATTTCAGCGAGCATTGACGACACC
ACCACTTTTTTCTAGTGATAATATCAACCTCCATAAACCACACATTTCAG
GCAGATTTATACAGAGACTAGCATGTACCGTGCTGTGTGAGTCCAGAGGG
TCATCGCCTCAGCTCGCTCATGTTTATTGAGCTGCACTCTATGATATAGC
TTTCATTTCTACCCTCTCACTTTCTTCATATAATCTCCTCATACACCCTC
GAGCTATATCTGCGTCCCCTCTGTCCCTCTCTTAATTAATATATTGCTCT
TATTACTCCATGCACGTATTGTATCCACTGACTACAATACTCTACGTTGT
CCCCACTCTGTGTATACGAAGTGTCCTCTAGATTGCAAATAGTATTCACG
CGAACTCATGTGCACTCTCGCGCCTGCTCCTGGTGACACCGTGTATATGC
CTCAGTGCGGAGCTTAACATACCACGCACTAACGAATATCGATAATGATA
CGACTAAGCGCATATCACACGAGGCTTCGCGTGTNAATCTCTACTATGTT
GTAATCCACACATATAGNAGGTCACCTGTACAAGAGGTCGCGGTCTTCTA
ATGATGCACACAGCAGGACATAATTAATAGCCTACACTCATCCTTCGTGT
ATTAGACCCGCTCACACTCATATATAGATACAACATATATGAGCCCACAG
CTCACGTCTTCACACTCATATCATCTACACGAACTGCATTCCCCATTATC
AATGTACCGACTACGCTTATAAATTTTCAACCACTCTCCATATATTCCTC
CACGTGTCTCATCACTCGGATGCATGCGCAGAGTGATCGATATTACACCC
TTGCTACGCGTTACCGCTATAGTACCTCTTCAATCATGTGTNAGACCGCG
CAGTGTGCTGATAAATAGAGCCACACACTAATCCAGATATATATCTCGCT
GTCTGACCGTCACTAAATCATATTGTGTGTATCACTTCCTCGAGAAGCGA
GTGATGCTGTGAGGTGTG

TGCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTATCAACAGAATTCAACAGCAGTGCAAATGCCCCAA
GACAGGGGACACACATCACCCCAGACCCTCCCCGTCTATCCAGCTATATT
TGCTCTACGTTTTTTGTTTGTTTGTTTTTTGTTTTTTTTGCCAAGACTTA
CCACAGAACCTACTGGAACCTCTTATGCTGAGCAGCCACGGCACAATGGC
TCCTGCCCAGCTGAAGAGCTCTGAAATGTGTCCACAGAACAGAGCTTGAC
AAACCAGGAGAGTAAAGGTCTTCTCTACTTGGCTTTGCTTCTGAATCCAG
CAGGAGGAGACCAACCTCTGTGGGAGCGTGGACTGTTTGTTGTGATGTGT
AGCTGTCAGTCAGGCTGTGACAGCCTGTGTAACAAAAACACCTTCAGATC
CCCAGGGCATCCTGCTCGTGGGTGCTTGCTCTCCCTCTCCTCTGAAGAAA
TTTCTAGAACATGCTTCTCTCAGATTCCTTCATGGATTCCCAGTTGGTGC
AACCTTGACACCGGGGAGATGGATCTGGGGTTAAAGGTCTTGCAGAGAAA
GCAAGAGGAACTGAATTCCGATCCCCAGAACCCACGTGCATGCTGTCTGG
TGTATCTGGTGTCTGGGGTATCAAACCTGCATAGGAGACAGGAAGGTGCC
TGGGCCTCACAGGCCTGATGAGTGAGAGAACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_c15.g1 MSMg01no486_c15.g1 CHROMAT_FILE:
MSMg01no486_c15.g1 PHD_FILE: MSMg01no486_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:23 2005
         (328 letters)



>mm_chr17_56626006_56626733
          Length = 728

 Score =  625 bits (323), Expect = 0.0
 Identities = 326/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttggctttgcttctgaatccagcaggaggagaccaacctctgtgggagcgtggactgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttggctttgcttctgaatccagcaggaggagaccaacctctgtgggagcgtggactgtt 374

                                                                       
Query: 61  tgttgtgatgtgtagctgtcagtcaggctgtgacagcctgtgtaacaaaaacaccttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 373 tgttgtgatgtgtagctgtcagtcaggctgtgacagcctgtgtaacaaaaacatcttcag 314

                                                                       
Query: 121 atccccagggcatcctgctcgtgggtgcttgctctccctctcctctgaagaaatttctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atccccagggcatcctgctcgtgggtgcttgctctccctctcctctgaagaaatttctag 254

                                                                       
Query: 181 aacatgcttctctcagattccttcatggattcccagttggtgcaaccttgacaccgggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aacatgcttctctcagattccttcatggattcccagttggtgcaaccttgacaccgggga 194

                                                                       
Query: 241 gatggatctggggttaaaggtcttgcagagaaagcaagaggaactgaattccgatcccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gatggatctggggttaaaggtcttgcagagaaagcaagaggaactgaattccgatcccca 134

                                      
Query: 301 gaacccacgtgcatgctgtctggtgta 327
           |||||||||||||||||||||||||||
Sbjct: 133 gaacccacgtgcatgctgtctggtgta 107


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space:   229361
Effective search space used:   229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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