BAC Information

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BAC

Clone NameMSMg01-486C19
Chromosome17 (Build37)
Map Location 25,164,192 - 25,298,015
singlet/doubletdoublet
Overlap geneIft140, BC054438, Telo2, 1110018H23Rik, Clcn7
Upstream genePrss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2, Npw, Zfp598, Syngr3, Gfer, Noxo1, Tbl3, Rnf151, Rps2, Snora64, Ndufb10, Rpl3l, Sepx1, Hs3st6, 4930528F23Rik, Fahd1, Hagh, Igfals, Nubp2, Spsb3, Mrps34, Nme3, Mapk8ip3, Hn1l, Cramp1l
Downstream geneGm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486C19.T7 (MSMg01no486_c19.b1)MSMg01-486C19.TJ (MSMg01no486_c19.g1)
ACCAG565439AG565440
length734759
length of high quality
(start - end)		248 (91 - 338)567 (69 - 635)
definitionCHROMAT_FILE: MSMg01no486_c19.b1 PHD_FILE: MSMg01no486_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:24 2005CHROMAT_FILE: MSMg01no486_c19.g1 PHD_FILE: MSMg01no486_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,297,769 - 25,298,015)(25,164,192 - 25,164,758)
sequence
CGTACGCAGAAACCTTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTT
TCGAGAATCCGCGGAATTCAATTTCAGTTTCCATGTAATTTTCAGATCAC
AAGCCCCAGGTACAGAACCAGTCTCCCCATCTTCTGGACAAAGATGCAGG
GCGGCATGTGTGGCACATGTGGGTTCCCTGACAGAGCCTGCTCCAGGCTG
TATAGCTCCCCATGCCCTGCTACTGAAGCCCCTGGCTGTGTGAGCAATGC
AGACACAGGGTGAGAAGGGCTCAGAGTCTGAGCAGAGACAGCAGTAAGTA
GTAGCTCACGTCTGTCTTTCTCACACACACTCTATTGTCTCTCAGAAGTG
AGCCACCAGGGGTGTGATAACACACACTTCATCCTGGGAGAAAGAACCAG
GAGTGGGGGCAGTCTGAGGCCTGGAAGGGCAAGGAATAAGGAAGGGGCTG
ATGACTGAAACCAACTGCCCAGGAACAAGGGTTGGGCCCCCCCCCCGCCC
AAGCCTAGGGAGGGGATATTGCCCCCGGTGGCGGCCCGGCCAAAAGGGGA
AAGGGGTTTGGTTAAAAAACAGGACCCCCTGGGAAAAAGGGCAAAAAAGG
CGTGGGGGGAACCCTTTGCCCCAAAAGGGGGTGGTGGGGGGGGAGACCCC
CCCCCCTCTCCTTTGTTTGGTGGGGGGGGAGGAAAAAAAAAAAAAAATCA
GCACGTGGGGGTCCCCTCTCTCTTCTCTTTTTTN

GCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCTCCTAGGCACGTAGAGAATTTACCATTGCA
ATATGTAGTACAGACCAAACCTCAACATAAGTGCCTGGCAGAGGCCCAGG
AGATAAGAAGGGAGGCTGCTGATGTTGGAAGAGTTCATAAGGTTTATAAC
TTTTGAATAGGAAAAATCTTTTGTTATAGAGAATAGATAGAGCCAGTGCA
GAGGGGAAATTGAGGAAGTCCCACCAGAGGGAATCTCTAAGCGGGTGATC
ACCATGGGCCAGAGAGAAGGGTATGGGAAGGAGGGCTGAGGTGGATGGGC
TGAAGCTGGTAACCTGGAAGAGGATGTGTACAGAGCTATGGAGGATCTAG
ATTTACATCTCTACCTGTTCCCCAAGATGAGGGCTTTAAGGTACAGTTCT
GTGTGTTTACATTTCCCTCTATGGAAGATGGGGATTCTTGTCTGTAAAAG
ACCTGCTCCATAATCTCTGATTAATGAATACTCATTGTTAAAATGAACTT
AGCTGATTGTGAACTTCCCATCTAATAAAAACTCAAGTATTTCATGAAGA
ATAAGATGAGACCAGAGGACAAGAAGAGCCCCTGAGGAGGCTCCTGAAGA
ACTTCAGAAATGAGCCAGAGAACCCTGGAAACCCATCCATCACTCAGACA
CCTAAGGAGAAAGAAAGGAGGCAGGCCAGATGTTGAAGGAGGCCGACCCG
TAGTTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_c19.b1 MSMg01no486_c19.b1 CHROMAT_FILE:
MSMg01no486_c19.b1 PHD_FILE: MSMg01no486_c19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
         (248 letters)



>mm_chr17_25297569_25298216
          Length = 648

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagatcacaagccccaggtacagaaccagtctccccatcttctggacaaagatgcagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcagatcacaagccccaggtacagaaccagtctccccatcttctggacaaagatgcagg 388

                                                                       
Query: 61  gcggcatgtgtggcacatgtgggttccctgacagagcctgctccaggctgtatagctccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcggcatgtgtggcacatgtgggttccctgacagagcctgctccaggctgtatagctccc 328

                                                                       
Query: 121 catgccctgctactgaagcccctggctgtgtgagcaatgcagacacagggtgagaagggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 catgccctgctactgaagcccctggctgtgtgagcaatgcagacacagggtgagaagggc 268

                                                                       
Query: 181 tcagagtctgagcagagacagcagtaagtagtagctcacgtctgtctttctcacacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tcagagtctgagcagagacagcagtaagtagtagctcacgtctgtctttctcacacacac 208

                  
Query: 241 tctattg 247
           |||||||
Sbjct: 207 tctattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no486_c19.g1 MSMg01no486_c19.g1 CHROMAT_FILE:
MSMg01no486_c19.g1 PHD_FILE: MSMg01no486_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
         (567 letters)



>mm_chr17_25163992_25164958
          Length = 967

 Score = 1096 bits (567), Expect = 0.0
 Identities = 567/567 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcctaggcacgtagagaatttaccattgcaatatgtagtacagaccaaacctcaacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcctaggcacgtagagaatttaccattgcaatatgtagtacagaccaaacctcaacat 260

                                                                       
Query: 61  aagtgcctggcagaggcccaggagataagaagggaggctgctgatgttggaagagttcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtgcctggcagaggcccaggagataagaagggaggctgctgatgttggaagagttcat 320

                                                                       
Query: 121 aaggtttataacttttgaataggaaaaatcttttgttatagagaatagatagagccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggtttataacttttgaataggaaaaatcttttgttatagagaatagatagagccagtg 380

                                                                       
Query: 181 cagaggggaaattgaggaagtcccaccagagggaatctctaagcgggtgatcaccatggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaggggaaattgaggaagtcccaccagagggaatctctaagcgggtgatcaccatggg 440

                                                                       
Query: 241 ccagagagaagggtatgggaaggagggctgaggtggatgggctgaagctggtaacctgga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagagagaagggtatgggaaggagggctgaggtggatgggctgaagctggtaacctgga 500

                                                                       
Query: 301 agaggatgtgtacagagctatggaggatctagatttacatctctacctgttccccaagat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaggatgtgtacagagctatggaggatctagatttacatctctacctgttccccaagat 560

                                                                       
Query: 361 gagggctttaaggtacagttctgtgtgtttacatttccctctatggaagatggggattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagggctttaaggtacagttctgtgtgtttacatttccctctatggaagatggggattct 620

                                                                       
Query: 421 tgtctgtaaaagacctgctccataatctctgattaatgaatactcattgttaaaatgaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtctgtaaaagacctgctccataatctctgattaatgaatactcattgttaaaatgaac 680

                                                                       
Query: 481 ttagctgattgtgaacttcccatctaataaaaactcaagtatttcatgaagaataagatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttagctgattgtgaacttcccatctaataaaaactcaagtatttcatgaagaataagatg 740

                                      
Query: 541 agaccagaggacaagaagagcccctga 567
           |||||||||||||||||||||||||||
Sbjct: 741 agaccagaggacaagaagagcccctga 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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