BAC Information

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BAC

Clone NameMSMg01-486P02
Chromosome17 (Build37)
Map Location 16,451,533 - 16,540,284
singlet/doubletdoublet
Overlap geneLOC100041383
Upstream geneLOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486P02.T7 (MSMg01no486_p02.b1)MSMg01-486P02.TJ (MSMg01no486_p02.g1)
ACCAG566026AG566027
length729755
length of high quality
(start - end)		679 (51 - 729)675 (81 - 755)
definitionCHROMAT_FILE: MSMg01no486_p02.b1 PHD_FILE: MSMg01no486_p02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:24 2005CHROMAT_FILE: MSMg01no486_p02.g1 PHD_FILE: MSMg01no486_p02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,539,612 - 16,540,284)(16,451,533 - 16,452,206)
sequence
CCCCACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTAGGTTTTTTCCTGACTGCACAGTTATATTGCTCTTAGAA
ATCTCAAGCTCTGTCAGAGGTTCCCACATTCTTACACCGCTTACCTATAC
TGCCATTAAGTGACTTCATAATCTCATACTTGTTTGTCATAGAAATTCAG
GCTGATGGTGCTCTGTCTTCTCACTTCTGTAATCAGCCAGATGTTCTCTG
TCTCTCAACTGAGAACAGTCTATGTCACTAGATAGAAAAGACTTCCCAAA
TCTGATTCCTGACTTGCATTTTCCATACAACTGCAAGAATTATCCAATAC
CTACCACGGAGAGTTAAATAACACATGGTCAGAGTCCAGCATGCATACCC
TACTACTTCTACCTAAATTGACAGGATAATCTCTGTTCCTGTGTTTTATT
TTACTTAGCTACCCCCAGGAGGAAGCACATGCATTTTAATTTTCTCAGTC
TTTTCTCCAGCCTAGCCTTTGTTGCATTTGTTAGTTGTCATTTGCAATCA
TCCTTCAGGCTCTTAGTGAATGTTTAGTATTACTACTTGCAATTGCAGTC
AGAGGCACAATTCACAGAAGCCCACTCTCCTCTATTACAAAGGGTCTTTG
AAGCAGCAGCAATCATATCCTCACTAAACTGCAGTCAGCTAAGCATATGT
CTCTGCCTTTCTGACAAATTGGGGATGCN

TTTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGGATGCACTAGGCAGTT
AGATTAGCCTACTTGTCTAAGTCTATGCTTCAAAGAACCAACAAGCCCCA
CTTCAAAATAATCCATTACACCATGAATTTGCCAATGGCTTAAATAATTG
GTAAATTTTACACTCTCATAATCCAATTACTTATGTATTTTATTGTTAGT
TCAGGATCAAGTCTTTATCATAAGGTCTGTATTTATGAGCACATTATATA
TAAACTGTGACAATCTATGTAAGAACTTATTACTCAGTGTTGAAAGAAAT
GAGGCATCAACCTATTAAAAGATAAAAGATACAAGTAACTTTCTATTGTT
GAAGAGGCCACTTTAAAAAGACTATGTATTGCATGATTTCAGATGTGTGA
CATTGAATATTTTATTTGTTTTGGTGTGCGCATGTGTGTGCATGTGTAGT
GAAACAGACTATTCTGAGTAATTTTATTATTATTTTGCAGTCTTGCAGAT
TAGAGCCAGAGCATTACACATGTTGAACAAGTGCTTTTACCTCTACCACT
GAATTCCATTTTCAGACTAGCTATATCTTACTTCCATGATGTATATGTGA
CTTTAAGTTTGTAGGAAAGCACACAAAACTTTACAGCATGAAGTGAAGAC
CTTACTACTTCAAAACGTCAATGACTCCTAAAAACAGTGGGTAGCACATG
AAATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_p02.b1 MSMg01no486_p02.b1 CHROMAT_FILE:
MSMg01no486_p02.b1 PHD_FILE: MSMg01no486_p02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:24 2005
         (679 letters)



>mm_chr17_16539408_16540486
          Length = 1079

 Score = 1263 bits (653), Expect = 0.0
 Identities = 668/673 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaggttttttcctgactgcacagttatattgctcttagaaatctcaagctctgt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattctaggtttcttcctgactgcacagttatattgctcttagaaatctcaagctctgt 818

                                                                       
Query: 65  cagaggttcccacattcttacaccgcttacctatactgccattaagtgacttcataatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 cagaggttcccacattcttacaccgcttacctatactgccattaagtgacttcataatct 758

                                                                       
Query: 125 catacttgtttgtcatagaaattcaggctgatggtgctctgtcttctcacttctgtaatc 184
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 757 catacttgtttgtcatagaaattcaggctgatagtgctctgtcttctcacttctgtaatc 698

                                                                       
Query: 185 agccagatgttctctgtctctcaactgagaacagtctatgtcactagatagaaaagactt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 agccagatgttctctgtctctcaactgagaacagtctatgtcactagatagaaaagactt 638

                                                                       
Query: 245 cccaaatctgattcctgacttgcattttccatacaactgcaagaattatccaatacctac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 cccaaatctgattcctgacttgcattttccatacaactgcaagaattatccaatacctac 578

                                                                       
Query: 305 cacggagagttaaataacacatggtcagagtccagcatgcataccctactacttctacct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 cacggagagttaaataacacatggtcagagtccagcatgcataccctactacttctacct 518

                                                                       
Query: 365 aaattgacaggataatctctgttcctgtgttttattttacttagctacccccaggaggaa 424
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaattgacaggataatctctgtttctgtgttttattttacttagctacccccaggaggaa 458

                                                                       
Query: 425 gcacatgcattttaattttctcagtcttttctccagcctagcctttgttgcatttgttag 484
           |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct: 457 gcacatgcattttaattttctctgtcttttctccagcctagcttttgttgcatttgttag 398

                                                                       
Query: 485 ttgtcatttgcaatcatccttcaggctcttagtgaatgtttagtattactacttgcaatt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttgtcatttgcaatcatccttcaggctcttagtgaatgtttagtattactacttgcaatt 338

                                                                       
Query: 545 gcagtcagaggcacaattcacagaagcccactctcctctattacaaagggtctttgaagc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gcagtcagaggcacaattcacagaagcccactctcctctattacaaagggtctttgaagc 278

                                                                       
Query: 605 agcagcaatcatatcctcactaaactgcagtcagctaagcatatgtctctgcctttctga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 agcagcaatcatatcctcactaaactgcagtcagctaagcatatgtctctgcctttctga 218

                        
Query: 665 caaattggggatg 677
           |||||||||||||
Sbjct: 217 caaattggggatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no486_p02.g1 MSMg01no486_p02.g1 CHROMAT_FILE:
MSMg01no486_p02.g1 PHD_FILE: MSMg01no486_p02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:24 2005
         (675 letters)



>mm_chr17_16451333_16452407
          Length = 1075

 Score = 1241 bits (642), Expect = 0.0
 Identities = 666/674 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagggatgcactaggcagttagattagcctacttgtctaagtctatgcttcaaagaacca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagggatgcactaggcagttagattagcctacttgtctaagtctatgcttcaaagaacca 260

                                                                       
Query: 61  acaagccccacttcaaaataatccattacaccatgaatttgccaatggcttaaataattg 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaatccccacttcaaaataatccattacaccatgaatttgccaatggcttaaataattg 320

                                                                       
Query: 121 gtaaattttacactctcataatccaattacttatgtattttattgttagttcaggatcaa 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gtaaattttacactctcataatccaattacttatggattttattgttagttcaggatcaa 380

                                                                       
Query: 181 gtctttatcataaggtctgtatttatgagcacattatatataaactgtgacaatctatgt 240
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 gtctttatcataaggtctgtatttatgagcacattatatacaaactgtgacaatctatgt 440

                                                                       
Query: 241 aagaacttattactcagtgttgaaagaaatgaggcatcaacctattaaaagataaaagat 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 aagaacttattactcagtgttgaaagaaatgaggcatcaacctattaaaagagaaaagat 500

                                                                       
Query: 301 acaagtaactttctattgttgaagaggccactttaaaaagactatgtattgcatgatttc 360
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 acaagtaactttctattgttgaagaggccacttaaaaaagactatgtattgcatgatttc 560

                                                                       
Query: 361 agatgtgtgacattgaatattttatttgttttggtgtgcgcatgtgtgtgcatgtgtagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agatgtgtgacattgaatattttatttgttttggtgtgcgcatgtgtgtgcatgtgtagt 620

                                                                       
Query: 421 gaaacagactattctgagtaattttattattattttgcagtcttgcagattagagccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaaacagactattctgagtaattttattattattttgcagtcttgcagattagagccaga 680

                                                                       
Query: 481 gcattacacatgttgaacaagtgcttttacctctaccactgaattccattttcagactag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcattacacatgttgaacaagtgcttttacctctaccactgaattccattttcagactag 740

                                                                       
Query: 541 ctatatcttacttccatgatgtatatgtgactttaagtttgtaggaaagcacacaaaact 600
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctatatcttactttcatgatgtatatgtgactttaagtttgtaggaaagcacacaaaact 800

                                                                       
Query: 601 ttacagcatgaagtgaagaccttactacttcaaaacgtcaatgactcctaaaaacagtgg 660
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 801 ttacagcatgaagtgaagaccttactacttcaaaatgtcaatgactcctaaaaacagtgg 860

                         
Query: 661 gtagcacatgaaat 674
           |||| |||||||||
Sbjct: 861 gtagtacatgaaat 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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