Query= MSMg01no487_l24.b1 MSMg01no487_l24.b1 CHROMAT_FILE:
MSMg01no487_l24.b1 PHD_FILE: MSMg01no487_l24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:27 2005
(552 letters)
>mm_chr17_81985623_81986574
Length = 952
Score = 810 bits (419), Expect = 0.0
Identities = 444/455 (97%), Gaps = 7/455 (1%)
Strand = Plus / Minus
Query: 4 ggaattcccaaagact-tcagaaagggaatgcaaccgtcccctggctgtgtcacagaagg 62
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 510 ggaattcccaaagactat-agaaagggaacgcaaccgtcccctggctgtgtcacagaagg 452
Query: 63 aaccccattcctggtggacagaggcacctgggaaagcatggcagcgcccgttgagatcct 122
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 aaccccattcctggtggacagaggcacctgggaaagcatggcagtgcccgttgagatcct 392
Query: 123 ggaacatgagacccccgtatccatcagtagattacttcaggcgagctctgcggaatgttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ggaacatgagacccccgtatccatcagtagattacttcaggcgagctctgcggaatgttg 332
Query: 183 ttgccttcagcttcactgactttaatttgttaaggagtgtccttgggttgaagtgttcat 242
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 331 ttgccttcagcttcactgactttaatttgttaaggagtgtccttgggttgtagtgttcat 272
Query: 243 gctgtgcactggtaaccaaccccagcacatctacagctttcttccctgagatgtccttat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 gctgtgcactggtaaccaaccccagcacatctacagctttcttccctgagatgtccttat 212
Query: 303 aagagtttacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaacttagaa 362
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 aagagttt-----acaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaacttagaa 157
Query: 363 acaggtagaaacaggtgtttattctcccatttctaatggactaacctgtaacacagccac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 acaggtagaaacaggtgtttattctcccatttctaatggactaacctgtaacacagccac 97
Query: 423 atgcaactgttattaggtaggttgatttaagctct 457
||||||||||||||||||||||||| |||||||||
Sbjct: 96 atgcaactgttattaggtaggttgacttaagctct 62
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_l24.g1 MSMg01no487_l24.g1 CHROMAT_FILE:
MSMg01no487_l24.g1 PHD_FILE: MSMg01no487_l24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:27 2005
(618 letters)
>mm_chr17_81844859_81845876
Length = 1018
Score = 975 bits (504), Expect = 0.0
Identities = 582/634 (91%), Gaps = 42/634 (6%)
Strand = Plus / Plus
Query: 1 acctggacaaagtacagttctcagcgtgaagaagcttgtcatcattgtgcgtgagaaatg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 acctggacaaagtacagttctcagcgtgaagaaacttgtcatcattgtgcgtgagaaatg 260
Query: 61 caggaaaacggagtataatgagaaaaggaaaaatgcttattaaagtatttaactcttgtc 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggaaaatggagtataatgagaaaaggaaaaatgcttattaaagtatttaactcttgtc 320
Query: 121 ttagctgactcctggaagtcattgctttagaacaactgaataaaatacaatagggccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagctgactcctggaagtcattgctttagaacaactgaataaaatacaatagggccagt 380
Query: 181 gagatgtgtcagtgggtaaaggcactggacccgcagtccggtgacctgacttccatccac 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 gagatgtgtcagtgggtaaaggcactggacccgcagtccggtgacctgatttccatccac 440
Query: 241 ggagacggctggtataaggagagaactgactttagcaaactgtcctctgaccttcaccca 300
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 441 ggagacggctggtagaaggagagaactgacttcagcaagctgtcctctgaccttcaccca 500
Query: 301 gatgccatgacaggcatacttccatacatgtacacacacacacacacacacacacacaca 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgccatggcaggcatacttccatacatgtacacacacacacacacacacacacacaca 560
Query: 361 cacacacacacacacacacacacacacacactacaaggaataaaaacatagtaaatattg 420
| ||| |||||||||||||||||||||||||||||
Sbjct: 561 cgcac--------------------------tacaaggaataaaaacatagtaaatattg 594
Query: 421 agagagagag--atg--------------ttatcctaagtgaggggtaatttcctccttc 464
|||||||||| ||| ||||||||||||||||||||||||| |||||
Sbjct: 595 agagagagagtaatgaatttctgtatttgttatcctaagtgaggggtaatttcccccttc 654
Query: 465 tttgtgttttactttatttctaagaatatttaaaatttttgttgagtttagaaaataatt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 tttgtgttttactttatttctaagaatatttaaaatttttgttgagtttagaaaataatt 714
Query: 525 acatcattatcctcttcccttttctttctccaaattctcccacatatgtctccttcattt 584
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 715 acatcattatcctcttccctttcctttctccaaattctcccacatatgtctccttcattt 774
Query: 585 tcaaattaatagcctctctttttattaattgcta 618
||||||||||||||||||||||||||||||||||
Sbjct: 775 tcaaattaatagcctctctttttattaattgcta 808
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space: 612864
Effective search space used: 612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
