Query= MSMg01no488_a24.b1 MSMg01no488_a24.b1 CHROMAT_FILE:
MSMg01no488_a24.b1 PHD_FILE: MSMg01no488_a24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:52 2005
(631 letters)
>mm_chr17_45518755_45519785
Length = 1031
Score = 669 bits (346), Expect = 0.0
Identities = 349/350 (99%)
Strand = Plus / Minus
Query: 1 cagtattagatcatgaggtggtacaaggccctttgttttaattgctttggagtcggatgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 cagtattagatcatgaggtggtacaaggccctttgttttaattgctttggagtcggatgc 291
Query: 61 gggctgttttccataaactaagtcatagtttggtagctgtgcaaatggtatttgactatt 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gggctgttttccataaattaagtcatagtttggtagctgtgcaaatggtatttgactatt 231
Query: 121 tttgactattttttgaaattattatatttagtatgtgtgtgtccttgcatgctgtggtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 tttgactattttttgaaattattatatttagtatgtgtgtgtccttgcatgctgtggtgc 171
Query: 181 acaaatgaaagtcagggaacaacttgcaggagtcacttttcaccttctacctgtgggtct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 acaaatgaaagtcagggaacaacttgcaggagtcacttttcaccttctacctgtgggtct 111
Query: 241 tggggatcaaactcatgtcatggcttgtcagcaaacatctttatcttctgagccaccatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tggggatcaaactcatgtcatggcttgtcagcaaacatctttatcttctgagccaccatg 51
Query: 301 cctcctcactttaaaatgataccttaaatacaaaggtgtttgcatacttg 350
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 cctcctcactttaaaatgataccttaaatacaaaggtgtttgcatacttg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space: 634041
Effective search space used: 634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_a24.g1 MSMg01no488_a24.g1 CHROMAT_FILE:
MSMg01no488_a24.g1 PHD_FILE: MSMg01no488_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:52 2005
(623 letters)
>mm_chr17_45341398_45342427
Length = 1030
Score = 1127 bits (583), Expect = 0.0
Identities = 616/631 (97%), Gaps = 9/631 (1%)
Strand = Plus / Plus
Query: 1 tgtttgcgtgtgtggacatgaagagacagtgggtgaactgcgagtgtcctgtcaccagct 60
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtttgcatgtgtggacacgaagagacagtgggtgaactgcgagtgtcctgtcaccagct 260
Query: 61 ttctgcaaagcaaa-----tcttggtgtcagtgacaatttcctgacctggcttcttaggt 115
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctgcaaagcaaagcaaatcttggtgtcagtgacaatttcctgacctggcttcttaggt 320
Query: 116 aggtgactgagttggcttgtgaatgtaatggcccctgtgatggtgaggtccagtctccct 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgactgagttggcttgtgaatgtaatggcccctgtgatggtgaggtccagtctccct 380
Query: 176 tgcttttgggatggacatgcccttcctgtacagttctgagagttcttccctgtggtccac 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcttttgggatggacatgcccttcctgtacagttctgagagttcttccctgtggtccac 440
Query: 236 ctgagatctcttccaaccttcccagtgattttacaagcaagctcgcagcataaaattcct 295
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgagagc-cttccaaccttcccagtgattttacaagcaagctcgcagcataaaattcct 499
Query: 296 ttctatgtaaaatagggagtctgtctgcatacaccaaaccctgcacacacataataatgt 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctatgtaaaatagggagtctgtctgcatacaccaaaccctgcacacacataataatgt 559
Query: 356 tgaaaaccttctc---acacacagttaagttcaaatgttttcagtacacacccatagaac 412
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 560 tgaaaaccttctcctcacacacagttaagttcaaatgttttcagtacatacccatagaac 619
Query: 413 aggctgatactttaaatcgaccagaaaaatctggttggaggatgggtttgcaaggctccg 472
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 620 aggctgatactttaaatcgaccggaaaaatctggttgggggatgggtttgcaaggctccg 679
Query: 473 gaaactcagttttaaaactcacaaggcccctttaatataacttcatgtaaacttcatata 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaaactcagttttaaaactcacaaggcccctttaatataacttcatgtaaacttcatata 739
Query: 533 aactttctctgctgactctatgagcaggaaagtcataagccctctgagccatcttccttc 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 aactttctctgctgactctatgagcaggaaagtcataagccctctgagccatcttccttc 799
Query: 593 tcctgtaaagtgtgttcacaccatcctcttc 623
|||||||||||||||||||||||||||||||
Sbjct: 800 tcctgtaaagtgtgttcacaccatcctcttc 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1030
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1020
Effective search space: 625260
Effective search space used: 625260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
