BAC Information

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BAC

Clone NameMSMg01-488I07
Chromosome17 (Build37)
Map Location 47,372,068 - 47,372,708
singlet/doubletsinglet
Overlap genenone
Upstream geneXpo5, Rpo1-1, Yipf3, Gm88, Tjap1, Egfl9, Abcc10, BC040756, Zfp318, LOC677168, Crip3, Slc22a7, EG328825, Ttbk1, BC048355, Parc, Srf, Ptk7, Klc4, Mrpl2, Cul7, BC011248, Klhdc3, Mea1, Ppp2r5d, Pex6, Gnmt, Tnrc5, Ptcra, 2310039H08Rik, Rpl7l1, BC032203, A330017A19Rik, Tbcc, Prph2, Ubr2, LOC100043385, EG240110
Downstream geneTrerf1, Mrps10, Guca1b, Guca1a, EG545208, 1700001C19Rik, AI661453, Tbn, Ccnd3, Bysl, Trfp, LOC668463, Usp49, 1110002E23Rik, Frs3, Pgc, LOC100043405, Tcfeb, Mdfi, Foxp4, LOC383250, 1700122O11Rik, 1700067P10Rik, 9830107B12Rik, A530064D06Rik, LOC100043419, Trem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I07.T7 (MSMg01no488_i07.b1)MSMg01-488I07.TJ (MSMg01no488_i07.g1)
ACCAG567222AG567223
length712683
length of high quality
(start - end)
647 (66 - 712)627 (57 - 683)
definitionCHROMAT_FILE: MSMg01no488_i07.b1 PHD_FILE: MSMg01no488_i07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005CHROMAT_FILE: MSMg01no488_i07.g1 PHD_FILE: MSMg01no488_i07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTGAACGACTCACTTTTCAAAGAGGGACCGCGGAATTCACGCT
TGCGAATCCTGCGCAACAGTCTGTGTTGCGGGAACACTTCATTACCACCA
TTCCCCAGCTGAAGAGTTCTGAATCCAGGCTGGATCCTTCTCAACAGTCT
GTTTTACGGGAACCTTTATGACCGTGACCCGCAGTTCTGGTTCCGGAATG
AGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCGGGTTTTCTCGTCC
AGGGATTTCTCGTCCCAGGTCTTCTCGTCCCGGGTCTCAGCACCAACTCT
TACATTTATTCACGCGACCGGCCAGGAAGAATGCAACAAACCGGAATCTT
CTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGAGCAAGAGCTTTATTG
CTTACATCTTCAGGAGCAAGAGAGCAAGAGCTTTATTGCTTACATCTTCA
GGAGCAAGAGTGCAAGAGAGCAAGAGCTCTATTGCTTACATCTTTAGGAG
CCAGAGCGCAAGAGAGCAAGAGAGAGAATGGCGAAACCCCATCCCTTTTT
AAGGAGAATTATCCTCCGCCTAGGACATGTCACTCCCTGATTGGCTGCAG
CCCATCGGCCGAGTTGTCGTCACGGGGAAGGCAGAGCACATGGGGTGGAG
AACTACCCTTGGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAG
GATGTCAGCGCC
TGGCGGCCGCCGGTCCAAAGAGGGGGGGTGACACTATAGAATGCTACAAG
GAGGTCCCAGCACCCGAATGTAGAAGCCAGATGCTGCAGTGCTTGTCCAG
GATCCCAGTGCTCCTCAGGCCCGCTGGGAGGTGGAAGCAGGGTTCTCCCC
AGAAGCCCACGGGCCACGTAGCCTGGTGCATACGGCTCCTTCGAGACCTT
GTCTCAAATAGTGCATAAGGTGAGGGTCTATCCCCAAGGTGGTTCTCTAA
CCTGTGTGTGTTCTCTGTAACATACACTCACATATACCAGGTCTCTGTTT
TTGTCTCTGTCTCTGTCTCTCTCTCTGTATGTGAGTATGTTGATGTGTGT
GCATCAGAGGTGAACTTCAAGTGTCCTCCCAGATTGCTCTCTCCTTGTCT
TTGGCGACAAGATCTGTCCCTGAGCCTGGAGCCCACCAATTCAGCAAGAC
TAACTTCCTCATAAGCTCTAAGGACCCTCCTGTCTCTCCCACCGCGGTCT
TGGATTGCAGGCACACACCAACCATGCCCTGACTTTCAGGTGGCTGTCAG
GGATTTGAACTCAGGTCCTTGTGCTTATGCCACCTGAGCCATCTCTTCAG
CCCTTGTATGATGTCTAAAGAAGGATGTCTCTTAGGACCTCAAAAAATCC
CCAAGCAGGGGCCAGCAGGATGGGCTAATCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i07.g1 MSMg01no488_i07.g1 CHROMAT_FILE:
MSMg01no488_i07.g1 PHD_FILE: MSMg01no488_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:28 2005
         (627 letters)



>mm_chr17_47371868_47372894
          Length = 1027

 Score =  978 bits (506), Expect = 0.0
 Identities = 599/660 (90%), Gaps = 52/660 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagcacccgaatgtagaagccagatgctgcagtgcttgtccaggatcccagtgctcctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagcacccgaatgtagaagccagatgctgcagtgcttgtccaggatcccagtgctcctc 260

                                                                       
Query: 61  aggcccgctgggaggtggaagcagggttctccccagaagcccacgggccacgtagcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcccgctgggaggtggaagcagggttctccccagaagcccacgggccacgtagcctgg 320

                                                                       
Query: 121 tgcatacggctccttcgagaccttgtctcaaatagtgcataaggtgagggtctatcccca 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgcatatggctccttcgagaccttgtctcaaatagtgcataaggtgagggtctctcccca 380

                                                                       
Query: 181 aggtggttctctaacctgtgtgtgttctctgtaacatacactcacatataccaggtctct 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 gggtggttctctaacctgtgtgtgttctctgtaacatacactcacatataccaggtctc- 439

                                                                       
Query: 241 gtttttgtctctgtctctgtctctctctctgtatgtgagtatgttgatgtgtgtgcatca 300
                ||||||||||||||        | ||  |||||||||||||||||||||||||||
Sbjct: 440 -----tgtctctgtctctg--------tatg--tgtgagtatgttgatgtgtgtgcatca 484

                                                                       
Query: 301 gaggtgaacttcaagtgtc--------------------------------ctcccagat 328
           |||||||||||||||||||                                |||||||||
Sbjct: 485 gaggtgaacttcaagtgtcttcccagagcatcagaggtgaacttcaagtgtctcccagat 544

                                                                       
Query: 329 tgctctctccttgtctttggcgacaagatctgtccctgagcctggagcccaccaattcag 388
           |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 545 tgctctctccttgtctatggcgacaagatctgtccctgaacctggagcccaccaattcag 604

                                                                       
Query: 389 caagactaacttcctcataagctctaaggaccctcctgtctctcccaccgcggtcttgga 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 caagactaacttcctcataagctctaaggaccctcctgtctctcccaccgcggtcttgga 664

                                                                       
Query: 449 ttgcaggcacacaccaaccatgccctgactttcaggtggctgtcagggatttgaactcag 508
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttgcaggcacacaccaaccatgccctgactttcaggtggctgtcagggatttgaactcag 724

                                                                       
Query: 509 gtccttgtgcttatgccacctgagccatctcttcagcccttgtatgatgtctaaagaagg 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gtccttgtgcttatgccacctgagccatctcttcagcccttgtatgatgtctaaagaagg 784

                                                                       
Query: 569 atgtctcttaggacc-tcaaaaaatccccaagcaggggccagcaggatgggctaatctct 627
           ||||||||||||||| | ||||| ||||||| |  ||||||||| |||||||||||||||
Sbjct: 785 atgtctcttaggaccgtgaaaaa-tccccaaac--gggccagcaagatgggctaatctct 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space:   627489
Effective search space used:   627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)