BAC Information

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BAC

Clone NameMSMg01-489A12
Chromosome17 (Build37)
Map Location 22,677,712 - 22,678,344
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp52, BC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik
Downstream geneEG210876, LOC100042656, EG628185, ENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A12.T7 (MSMg01no489_a12.b1)MSMg01-489A12.TJ (MSMg01no489_a12.g1)
ACCAG567613AG567614
length7291,844
length of high quality
(start - end)
633 (79 - 711)---
definitionCHROMAT_FILE: MSMg01no489_a12.b1 PHD_FILE: MSMg01no489_a12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:07 2005CHROMAT_FILE: MSMg01no489_a12.g1 PHD_FILE: MSMg01no489_a12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTNNTTGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTATTTTCCTTATTTGAATTCTTTGCTTAGTACAT
TCTTTGACATATACTCTCACATAAGCCTATGATTGCAATATTTGAAAATC
ATGTCACTTTGATGTCTCCATATTTTCATTTGTCTATATCTATATGTGGG
AACCTATATGTGGGAACAGAACACTGGTTGTACTATTGTTAATCTGTATT
CTTGCAGTGTTTGGGTTTGTAATAATCAAGTGAGCTATGCTCAGAACACA
CATGAGATTTCTTTAATAATCTCTAAATACATCTCTACCTCAATGGCTAC
ATTTTCAGCATATATGTTCTTTTCCATGAGAATTATTATTCCTCACCATT
ACAATAAAGAATATTAACTGTAAATTTCATAACTATGCAATATGAAATAT
CACTTAAGATCTTTCAGCAATCTGTAGGTTGCCATGTTGTCTTATTGACA
GTGCCCTTTGCCTTACAGAGATGCACAGTTTCATGAGGTTCCAATTTGTC
AATTGTGATCTTAGAGCTTGAGACACTAGTATTTTGTTTAGGAAAGATTC
TCCTCTGCCCATGTGTTACAGGCTTTTCCCCACTTAATCTGCTATTATTT
TCAGTGTATCTCCTGTTACTTGGAGGTCCTTGATCCACTTGGACCTCAGC
TTTGTACAAAGAGATAAGAATTCATCAGN
TTCCTCTGTGCTTTTTCGAGTAACCTANCAGTACCCTTNNCAACGACTGA
GCACAGGGATCANANGACGAACACTCTCTCTCGTCCTCCTCCACATCAGA
GGACGGGNGTCTGCGCGTCGCCCGCGGTGTTCTTGCTCATCTCTCTCGTT
GTCGCCAGTCGTGTGTGAGTAATGTGTGTCAGTGCGTAGTAGCTCGAGCA
GGATTGCGCGTAGCACAGACACGCAGGTCAGACGTACTTACGTATTGTGT
GTTATACCGTGGTTGTCGCGGCGCTCGCGCGCCCTGCGATAGTANTTATC
CTCACGAACACGTCGTCGCATACTATAGCTCTNCTGNTGTTNCTGATATC
ACCACGCTGCACGTCCGCCGCCGCGCGCAGTCATCGATGTTGTGTGTATG
TGTGNCGATATATNTATTACNCANTTATAAGTGTATTAATGTGCGTCGTC
ACTAGATGTATATNGATTATGCGCGGACTAAAATAGATCAATACATATAG
GATATGTATATGTGGTGAGACACTCAGATANAGAATNTGTAGTAGTGATA
CGTGATTGTGATTATANCTAAAGTACGTAGGTAAGGTGAATCGAAGCATG
TATAATATATGGTTCGACGAGATACTAATGACACACATAACACGGATGCC
ACCGGTAGAGATATAGCACAGTCGACGAGTGNATNACATGATAGAGAGAT
ACNAGTTATAGANCAGCTTACNGTACCTCCTGACGGTACACGACGAGAAC
GNACGTAATAGTGTTGAGCAGCGGACGTCGATGACTATAAANATTTTGAC
TACGTCGACCCCGCTCGTCGTGCACGCGTAGTCTATTTATTTCTCTAATT
ACCGTCGCGTACGTCCGCGTATATTCTGTTTGCGTCTCNGCTGACTGTGT
CAGAGCGTCGATCAGCTCGTGTCGGTGTGTGTANATAGATAGGACGGCGC
GTCGTATGCTGTGCTCTGTCNGCGACGCGCGTTTATCGCGACGCTGCTCT
GCGCGTCGAGGGTACGCGTCTTTNTTTATGATATTTNTCTACACGANANG
ATAGCACGACGCCGCTACGCGTGCGCGCGTATCGAGTCGAGTATATATAA
CATGTATCAGATGACGTACGACTGGACGTATCTGTGATCTTCGGAATGAC
GCACGAGCGTACTCGTATGAGTGTATCGCACATCTGATAATAATATTATC
GCATACTAATCGTATCGCGGACACAATTATGGTACACAACACAGATACGA
TTGGCATACATGGAGTATACCTAGACAGATAATATCATATGATATCATCG
CTCATCACATCGTTGAACACGTATGTGTGGCTGTCAATATATGCGTGATG
ACTCAGACTGACTGAANATAGCAGATACGGACGCGTGTCATCGTCGTCAC
ACGCACTGCTGTCTTGCGTTGTGTCGAATATGTGCNTCGCGAGCGTGTAT
GCTCACGGCAGTNGTTGTGCACTAGTACGGGAGTCGTCGCCCGCTATACG
CATGATTCTCTNTACTCTGATACGACATCGGACCGCATGCGTGATGACAT
ATAGAGTGTGTCGTATGCCGAGCAGTCTGAAATATATANCGACTACTACG
TAGACGAGANCGTCGTGCATGTCTNGNGTCTGCAGTGATCTCATACTGTG
CTGCTGCGNTCAGANTGATACAGTAGCGACGCACATATATTATACATCGC
GCCGCTGCGACTGACTTGCACGACGGTCTGTANTTTNGTCCACGCTAGNC
AGCTCGANTATATGACGATCGCGCGGNCGTGCTGTNCANGATACATTTNG
ATACGCATAGTCGTGTGGCGCGGTGTGACTAGTCTGGCACNAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a12.b1 MSMg01no489_a12.b1 CHROMAT_FILE:
MSMg01no489_a12.b1 PHD_FILE: MSMg01no489_a12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:07 2005
         (633 letters)



>mm_chr17_22677512_22678544
          Length = 1033

 Score = 1162 bits (601), Expect = 0.0
 Identities = 625/633 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaattctttgcttagtacattctttgacatatactctcacataagcctatgattgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaattctttgcttagtacattctttgacatatactctcacataagcctatgattgcaa 260

                                                                       
Query: 61  tatttgaaaatcatgtcactttgatgtctccatattttcatttgtctatatctatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatttgaaaatcatgtcactttgatgtctccatattttcatttgtctatatctatatgtg 320

                                                                       
Query: 121 ggaacctatatgtgggaacagaacactggttgtactattgttaatctgtattcttgcagt 180
           |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 321 ggaacctatatgtgggaacagaacactggttgtattattgttgatctgtattcttgcagt 380

                                                                       
Query: 181 gtttgggtttgtaataatcaagtgagctatgctcagaacacacatgagatttctttaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgggtttgtaataatcaagtgagctatgctcagaacacacatgagatttctttaata 440

                                                                       
Query: 241 atctctaaatacatctctacctcaatggctacattttcagcatatatgttcttttccatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctaaatacatctctacctcaatggctacattttcagcatatatgttcttttccatg 500

                                                                       
Query: 301 agaattattattcctcaccattacaataaagaatattaactgtaaatttcataactatgc 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agaattattattcctcaccattacaataaagaatattaactgtaaatttcataactttgc 560

                                                                       
Query: 361 aatatgaaatatcacttaagatctttcagcaatctgtaggttgccatgttgtcttattga 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 aatatgaaatatcacttaagatctttcagcaatctgtaggttgccgtgttgtcttattga 620

                                                                       
Query: 421 cagtgccctttgccttacagagatgcacagtttcatgaggttccaatttgtcaattgtga 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cagtgtcctttgccttacagagatgcacagtttcatgaggttccaatttgtcaattgtga 680

                                                                       
Query: 481 tcttagagcttgagacactagtattttgtttaggaaagattctcctctgcccatgtgtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 681 tcttagagcttgagacactagtattttgtttaggaaagattctcctctgcccatgtgata 740

                                                                       
Query: 541 caggcttttccccacttaatctgctattattttcagtgtatctcctgttacttggaggtc 600
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggattttccccacttaatctgctattattttcagtgtatctcctgttacttggaggtc 800

                                            
Query: 601 cttgatccacttggacctcagctttgtacaaag 633
           |||||||||||||||||| ||||||||||||||
Sbjct: 801 cttgatccacttggacctgagctttgtacaaag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)