Query= MSMg01no489_m20.b1 MSMg01no489_m20.b1 CHROMAT_FILE:
MSMg01no489_m20.b1 PHD_FILE: MSMg01no489_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:10 2005
(578 letters)
>mm_chr17_67731945_67732921
Length = 977
Score = 1033 bits (534), Expect = 0.0
Identities = 564/574 (98%), Gaps = 1/574 (0%)
Strand = Plus / Plus
Query: 5 gaattctttcttctagctgcctagttttcatttcttgattgtgcaggaatgccaaccatg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttcttctagctgcctagttttcatttcttgattgtgcaggaatgccaaccatg 264
Query: 65 cagtctgataaagtctggctctttgggaatttgggggcaagtggcttgtactcctcttgg 124
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 265 cagtctgataaagtctggctctttgggaattt-ggggcaagtggcttgtactcctcttgg 323
Query: 125 gttctggaaacctcttgtggtctcgagtcttccaataactctgtgctgtcctcaggggaa 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttctggaagcctcttgtggtctcgagtcttccaataactctgtgctgtcctcaggggaa 383
Query: 185 atgatattttctgcaagaggctggaccactgggagtttgtcctggattccccattcactg 244
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgatattttctgcaagaggctcgaccactgggagtttgtcctggattccccattcactg 443
Query: 245 gctgtcttagtcagggtttctattcctgcacaaacatcatgagcaagaagcaagttgggg 304
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctgtcttagtcagggtctctattcctgcacaaacatcatgagcaagaagcaagttgggg 503
Query: 305 aggaaaagggtttgttcagcttacacttccacattgctgttcatcaccaaaggaagttgg 364
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 504 aggaaaagggtttattcagcttacacttccatgttgctgttcatcaccaaaggaagttgg 563
Query: 365 gacaggaactcatgcaggtcaggaagcaggagctgatgagaggccacggagggatattac 424
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 564 gacaggaactcatgcaggtcaggaagcaggagctgatgagaggcctcggagggatattac 623
Query: 425 ttactggctttctcccttggcttgctcagcttactttcttatagaacccatgacaccagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttactggctttctcccttggcttgctcagcttactttcttatagaacccatgacaccagc 683
Query: 485 ccagagacagcaccacccacaacgggacttcccacccttgattactaattgaaaaaaaat 544
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 ccagagacagcaccacccacaacgggacctcccacccttgattactaattgaaaaaaaat 743
Query: 545 gctttacagttggatctcatggaagcatttcctc 578
||||||||||||||||| ||||||||||||||||
Sbjct: 744 gctttacagttggatcttatggaagcatttcctc 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 977
Length adjustment: 10
Effective length of query: 568
Effective length of database: 967
Effective search space: 549256
Effective search space used: 549256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_m20.g1 MSMg01no489_m20.g1 CHROMAT_FILE:
MSMg01no489_m20.g1 PHD_FILE: MSMg01no489_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:11 2005
(601 letters)
>mm_chr17_67898102_67899097
Length = 996
Score = 934 bits (483), Expect = 0.0
Identities = 536/565 (94%), Gaps = 23/565 (4%)
Strand = Plus / Minus
Query: 1 atagaattggtcacccgcccccacctccccccccccacctcctgccccctgtagtttgag 60
||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 556 atagaattggtcacccgccccca-ctcctccccc---cctcctgccccctgtagtttgag 501
Query: 61 gaggcagcacctacctaccttaagaagtctgctctgtattcagctccaggcctggtacct 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gaggcagca-ctacctaccttaagaagtctgctctgtattcagctccaggcctggtacct 442
Query: 121 gcaggggtgctgagggaggagggcagagcgatattaagccatgtgttctctttccagtcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaggggtgctgagggaggagggcagagcgatattaagccatgtgttctctttccagtcg 382
Query: 181 atttcttccctggcccccggggccttcctgcagcccagccaccagtagcgattcatcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttcttccctggcccccggggccttcctgcagcccagccaccagtagcgattcatcact 322
Query: 241 gttttttt----gaagtcccctggcagagccagagaacaaagacagcaaattcttggctt 296
| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 g----tctcccagaagtcccctggcagagccagagaacaaagacagcaaattcttggctt 266
Query: 297 ttaagctcaagagtttcttttctctcctccagagttgggaagaggcacaaggaggagagg 356
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 ttaagctcaagagtttcttttctctcctccagagttgggaagaggcagaaggaggagagg 206
Query: 357 gccaa----------aaaacaaaacaaaacaaaaaaacaaaacaaagcctttcacatctg 406
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gccaaaaaacaaaacaaaacaaaacaaaacaaaaaaacaaaacaaagcctttcacatctg 146
Query: 407 cttcactagggctctgtggcagccaggggtgggagcaggggaaaggaaaagcttgggtta 466
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 145 cttcactagggctctgtggcagccaggggtgggagcaggggaaaggaaatgcttgggtta 86
Query: 467 actctcccacgatacagaaaaccgtgcagaaatctggaacaaacaaaataaaacaaaaca 526
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 85 cctctcccacgatacagaaaaccgtgcagaaatcaggaacaaacaaaataaaacaaaaca 26
Query: 527 aaacactgggtcaaactgctcaaaa 551
|||||||||||||||||||||||||
Sbjct: 25 aaacactgggtcaaactgctcaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 996
Length adjustment: 10
Effective length of query: 591
Effective length of database: 986
Effective search space: 582726
Effective search space used: 582726
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
