BAC Information

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BAC

Clone NameMSMg01-490G04
Chromosome17 (Build37)
Map Location 54,127,209 - 54,127,576
singlet/doubletsinglet
Overlap geneSult1c1
Upstream geneLOC668506, EG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, LOC100043829
Downstream geneEG435531, Slc5a7, LOC668529, 1700025K24Rik, Trp53-ps, LOC240117
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490G04.T7 (MSMg01no490_g04.b1)MSMg01-490G04.TJ (MSMg01no490_g04.g1)
ACCAG568633AG568634
length759746
length of high quality
(start - end)
658 (47 - 704)368 (337 - 704)
definitionCHROMAT_FILE: MSMg01no490_g04.b1 PHD_FILE: MSMg01no490_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:58 2005CHROMAT_FILE: MSMg01no490_g04.g1 PHD_FILE: MSMg01no490_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXNATCGAGAGGAGCCGCGG
AATTCTTTGTTTTTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATAT
GTACTCACTGATAAGTGGATATTAGCCCCAAACCTAGGATACCCAAGATA
TAAGATACAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAA
GTGTGGACACTATGCCCCTTTTTAGAATTGGGAACAAAACACCCATGGAA
GGAGTTACAGAGACAAATTTTGGAGCTGAGATGAAAGGATGGACCATGTA
GAGACTGCCATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGA
CACCATTGCATACACTAGCAAGATTTTATCGAAAGGACCCAGATGTAGCT
GTCTCTTGTGAGACTATGCCGGGGCCTAGCCAACACAGAAGTGGATGCTC
ACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAGGAGCTAGAGA
AAGTACCCAAGGAGCTAAAGGGATCTTCAACCCTATAGGTGGAACAACAT
TATGAACTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATC
AAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACG
CAAACTTTA
NTTTTCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTGAATAGCCTGCTAG
CCTCAACCATTCAATCCCTCTGTTTTATGTCTTAGGATTTAGCTCCCTAA
AATTCGAGATTATATACATTCACCACTACTTGGGCTCTTTTAGGAAGTTT
TAGGACTCTAATACATTTCCTTTCCTCAATGAGTAGGGTTTATGATAGTA
AGTTCATTTCTATAGGAGCTAGTACTACAACTTTGTTGAAGGCTTATGTT
TCCAGGGTAGTTCAGGACATGAGCTGCATTTTCTTGGATATTGTTAGCTT
ACAGTTTGCTCTTATGCTGGCTGCTGTCTTTGAGGTTGTTGGGACAGAAG
AGCTGCGTGGCTGGCTCTAATGCACTGGTCCTTGCCTACAAGAACTGAGA
AGACAGTTGTTCATCTACATCTGAGTCTCCATTTTTGCTCATAGGGGACC
ACTCAGAGTTTATTTAGTGGTATAAGTATATGCATATCTGTACATGTGCT
TCCTCAGGGACCAAGGAGGCCAGAATAGGGTGGTGGATGCTCTTGGGCTG
GAGTTACAGATGGTTGTGAAGCTCTGAACCACAGAGCCCAAGGGGACCAC
TTTTCTCCAGAATCCTTCGAAGAATTCATGCTTGAACCTGACCATTTATT
TCCAGTTCCCAGTGCTGCAAGGCTTTTCTGTGCTGACATTTCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_g04.g1 MSMg01no490_g04.g1 CHROMAT_FILE:
MSMg01no490_g04.g1 PHD_FILE: MSMg01no490_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:58 2005
         (368 letters)



>mm_chr17_54127009_54127776
          Length = 768

 Score =  650 bits (336), Expect = 0.0
 Identities = 360/368 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatattgttagcttacagtttgctcttatgctggctgctgtctttgaggttgttgggaca 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 201 gatattgttagcttacagtttgctcttatcctggctgctgtctttgaggttgttgggaca 260

                                                                       
Query: 61  gaagagctgcgtggctggctctaatgcactggtccttgcctacaagaactgagaagacag 120
           ||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagagctgtgtggcttactctaatgcactggtccttgcctacaagaactgagaagacag 320

                                                                       
Query: 121 ttgttcatctacatctgagtctccatttttgctcataggggaccactcagagtttattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttgttcatctacatctgagtctccatttttgctcataggggaccacttagagtttattta 380

                                                                       
Query: 181 gtggtataagtatatgcatatctgtacatgtgcttcctcagggaccaaggaggccagaat 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtggtataagtatatgcatatctgtacatgtgcttgctcagggaccaaggaggccagaat 440

                                                                       
Query: 241 agggtggtggatgctcttgggctggagttacagatggttgtgaagctctgaaccacagag 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 agggtggtggatgctcttgggctggagttacagatggttgtgaagctatgaaccacagag 500

                                                                       
Query: 301 cccaaggggaccacttttctccagaatccttcgaagaattcatgcttgaacctgaccatt 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 cccaaggggaccacttttctccagaatccttcgaagaatccatgcttgaacctgaccatt 560

                   
Query: 361 tatttcca 368
           ||||||||
Sbjct: 561 tatttcca 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)