BAC Information

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BAC

Clone NameMSMg01-490O06
Chromosome17 (Build37)
Map Location 91,806,226 - 91,806,467
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn1, EG668871, LOC668872, LOC627235
Downstream geneLOC100043741, LOC100043742, EG640442, LOC627395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490O06.T7 (MSMg01no490_o06.b1)MSMg01-490O06.TJ (MSMg01no490_o06.g1)
ACCAG569014AG569015
length751742
length of high quality
(start - end)
682 (70 - 751)244 (86 - 329)
definitionCHROMAT_FILE: MSMg01no490_o06.b1 PHD_FILE: MSMg01no490_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:36 2005CHROMAT_FILE: MSMg01no490_o06.g1 PHD_FILE: MSMg01no490_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAGGATTATCCCTAACCATAATAAAGGCAATTTACTGCAAA
CCAACAGCCAATATCAAATTAATGGAGAGATACTTGAAGCAATCCCACTA
AAATCAGGGACAAGACAAGGATGCCCTCCCTTCCCGTATCTATTCAATAT
AGGACTTGAAGTGTTAGCTAGAACAATAAGACAACAAAAAGAGATCAAGG
GGGCACAAATTGGCAAAGAAGAAATAAATTATCATTATTTGCAGATGATA
TGATAGTATACATAAATGACCCATAAACTCTACCAGAGACCTTCTCCAGC
TGATAGACAACTTCAGCAAAGTGGTGGGATATAAAATCAACTCAAATAAA
CAAGTAGCCTTCCTTCATACAAATGATAAACAGGCTGAGAATGAAATTAG
GGAAACAAATCCCTTCACAATAGCCACAAATAATGTAAAATATCTTGGGG
TAATTGCAATCAAACAAGTGAAATATCTATATGACAACAATTGGAAGTGT
CTCAAGAAAGAAATTGAAGAAGATCTCAGAAAATGGAGATATCTCCTATA
CTCATGGATAGGCCAAATTAACATAGTAAAACTGGCCATCCTACCAAAGG
CAATCTGCAGAGTCAATGCAATCCCAATCAACATCCCAACACAATTTTTC
AAAGACATGGAAAGAACAATTATCAAATTCATCTGCAAAGTCAATAAAAA
C
GTAATGCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTGCTAACAAAAGGGGAAGAGAGTGAGAG
TGGGAATCCATGGATAGATTTGGGGGCGGAAAGGAAAGGGAAAAGAAAGG
GAAAAAGAAGAAATGATATCATTCTAATCTTAAATAATAAATATTATTTT
TTTAAAGAAAAGGAGAACAAATATAAAGGATTGCTGTATTTCATTATTTA
TTGTGTTGATTATATACTTATTATATTATTACATAGCTTATATGCAATAA
ATCCTTGAATAAACCCTTTCTGCAAGTTGTTTTTTTTTTTTAGAAAAAGT
ATATTTTTATAAAAAATGTTGCAGAAGATATAATAGCATTATGTACATTT
TGAAATCTAAAAAACAATATAAAGAGGACCACACATAAAATGACAAATTC
CTATCAATTACTTCGTAGATGGAAATGCAGTGATTGGAGCCCTGGAGCAG
TATACTAGGGCTGTAATGTTAAACAGAAATAATTTTCAGGAAGCTGGTGA
TAAATACAGGAACATTCTTTATACACTTCTTTATGCCTTTGTATTTAGTG
AATGAAGGTACTTTTTAAATAAGAGGAAAACCAGCAGATCCTAAGGCAAA
ATGGCAATAAGAATTCCCACATCAGCATAGGCCTTGATAGAAACAATAAG
ACGAAAGACCACAAAAAGGACCAGAATAAATCCTAGCACACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_o06.g1 MSMg01no490_o06.g1 CHROMAT_FILE:
MSMg01no490_o06.g1 PHD_FILE: MSMg01no490_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:37 2005
         (244 letters)



>mm_chr17_91805905_91806548
          Length = 644

 Score =  439 bits (227), Expect = e-128
 Identities = 239/243 (98%), Gaps = 2/243 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   aagagagtgagagtgggaatccatggatagatttgggggcggaaaggaaagggaa-aaga 61
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct: 563 aagagagtgagagtgggaatccatggatagatttgggggcagaaaggaaagggaagaa-a 505

                                                                       
Query: 62  aagggaaaaagaagaaatgatatcattctaatcttaaataataaatattatttttttaaa 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 504 aagggaaaaagaagaaatgatatcattctaatcttaaataataaatattattttttaaaa 445

                                                                       
Query: 122 gaaaaggagaacaaatataaaggattgctgtatttcattatttattgtgttgattatata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gaaaaggagaacaaatataaaggattgctgtatttcattatttattgtgttgattatata 385

                                                                       
Query: 182 cttattatattattacatagcttatatgcaataaatccttgaataaaccctttctgcaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cttattatattattacatagcttatatgcaataaatccttgaataaaccctttctgcaag 325

              
Query: 242 ttg 244
           |||
Sbjct: 324 ttg 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)