Query= MSMg01no491_b19.b1 MSMg01no491_b19.b1 CHROMAT_FILE:
MSMg01no491_b19.b1 PHD_FILE: MSMg01no491_b19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
(680 letters)
>mm_chr17_41419703_41420783
Length = 1081
Score = 646 bits (334), Expect = 0.0
Identities = 372/392 (94%), Gaps = 15/392 (3%)
Strand = Plus / Minus
Query: 1 cagtcccctgctcgaaa-caacaacttcctaggaatctcatcacaaattttattgacagg 59
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtcccctgctcgaaaccaacaacttcctaggaatctcatcacaaattttattgacagg 322
Query: 60 gatatactaaactcctagtataaccctattggcgtctgtttttaattcctctgattataa 119
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 gatatactaaactcctagtataaccctattggtgtctgtttttaattcctctgattataa 262
Query: 120 ttcactaaagacaagaattgaattttgtaaatttggcttttacctctaaacatgtaccat 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 ttcactaaagacaagaattgaattttgtaaagttggcttttacctctaaacatgtaccat 202
Query: 180 ctcacacacacacacacacacacacacacacacacat---acacacatgtgtgtcatgtt 236
||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 201 ----cacacacacacacacacacacacacacacacgtgtg-------tgtgtgtcatgtt 153
Query: 237 cctacacagagaataaaaacaatcatacatctttccctggtgtgaaccctgtgagatgtt 296
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 cctacacagagaagaaaaacaatcatacatctttccctggtgtgaaccctgtgagatgtt 93
Query: 297 ataacaaacagtttagcaagacatgcttactggtataatagtagcaggaatgccctgggg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92 ataacaaacagtttagcaagacatgcttactggtataatagtagcaggaatgccctgggg 33
Query: 357 ataaccagctgcttcctgattgtttttaaggc 388
||||||||| ||||||||||||||||||||||
Sbjct: 32 ataaccagccgcttcctgattgtttttaaggc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1081
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1071
Effective search space: 717570
Effective search space used: 717570
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_b19.g1 MSMg01no491_b19.g1 CHROMAT_FILE:
MSMg01no491_b19.g1 PHD_FILE: MSMg01no491_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:55 2005
(588 letters)
>mm_chr17_41362768_41363757
Length = 990
Score = 1065 bits (551), Expect = 0.0
Identities = 584/603 (96%), Gaps = 15/603 (2%)
Strand = Plus / Plus
Query: 1 tcttccatgctttttttcccctcaagtattatcttcagctactttac------------- 47
|||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 188 tcttccatgcttattttcccctcaagtattatcttcagctactttacaggtctactttac 247
Query: 48 tgcacagtggactgccctctggagcttaggcactgtgaaattcagatctgttactaacat 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tgcacagtggactgccctctggagcttaggcactgtgaaattcagatctgttactaacat 307
Query: 108 tgtaagtggctgaggagtcatattggggaaatactgttgatagcaatggcatttaaagaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgtaagtggctgaggagtcatattggggaaatactgttgatagcaatggcatttaaagaa 367
Query: 168 ggaatggcagacaggtcaaaaatgatcagcttgctctggttccatgaaacaacagaacag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ggaatggcagacaggtcaaaaatgatcagcttgctctggttccatgaaacaacagaacag 427
Query: 228 gtggagatgtggctgtgttaatcaagagtgtgctaataaaatctctgtactcataagtaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gtggagatgtggctgtgttaatcaagagtgtgctaataaaatctctgtactcataagtaa 487
Query: 288 acaaaaa-ttaaacaaaggcatttttaattgagtcattaatataatatcaaaatgataag 346
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 acaaaaaattaaacaaaggcacttttaattgagtcattaatataatatcaaaatgataag 547
Query: 347 atttgactaggatcataaaaa-tgttctacttatagagtaatgtgataagtgattgctca 405
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 548 atttgactaggatcataaaaaatgttctacttatagagtaatgtgataagtgattgctca 607
Query: 406 attagaaactaaattggtataattagaagcacatgaaaataacagacgtctccagtgaaa 465
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 608 attagaaactaaattggtataattagaagcacatgaaaataacagatgtctccagtgaaa 667
Query: 466 tttgaagcacctccagtctctggggtttctacaggcttggcaatgaattcttctattata 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttgaagcacctccagtctctggggtttctacaggcttggcaatgaattcttctattata 727
Query: 526 gcctaacagcagaactttggtatttacttaaagtgtcctgttctatatccttttacactc 585
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 gcctaacaccagaactttggtatttacttaaagtgtcctgttctatatccttttacactc 787
Query: 586 ttc 588
|||
Sbjct: 788 ttc 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
