Query= MSMg01no492_c22.b1 MSMg01no492_c22.b1 CHROMAT_FILE:
MSMg01no492_c22.b1 PHD_FILE: MSMg01no492_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:20 2005
(472 letters)
>mm_chr17_87236904_87237775
Length = 872
Score = 808 bits (418), Expect = 0.0
Identities = 466/492 (94%), Gaps = 20/492 (4%)
Strand = Plus / Plus
Query: 1 ctacacagagaaaccctatctag------aaaaataaaaacaaaacaac---aacaa-ta 50
||||||||||||||||||||||| ||||| |||||||||||||| ||||| ||
Sbjct: 181 ctacacagagaaaccctatctagaaaaacaaaaacaaaaacaaaacaacaataacaatta 240
Query: 51 aaaa---------aaataacccttaaagtgaatgttccaat-aaaaaaatgtccattatg 100
|||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 241 aaaaaaacaaaataaataacccttaaagtgaatgttccaataaaaaaaatgtccattatg 300
Query: 101 ccgggcgtggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcagatta 160
|| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 301 ccaggcgtggtggcgcatgcctttaatcccagcacttgggaggcagaggcaggtagatta 360
Query: 161 ctctgagcttgaggccaggctggcctatggagtgaattccaggacagccagggctacata 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctctgagcttgaggccaggctggcctatggagtgaattccaggacagccagggctacata 420
Query: 221 aataaactctgtctcaaaaccaaaggaaatctaaccaaatcaaaagccctcaaacaaaac 280
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 421 aataaactctgtctcaaaaccaaaggaaaccaaaccaaatcaaaagccctcaaacaaaac 480
Query: 281 agaaagagcgtccattacaatggactgtgaaatctaagttgtataatgagcaaagaaaaa 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agaaagagcgtccattacaatggactgtgaaatctaagttgtataatgagcaaagaaaaa 540
Query: 341 taatgaagacatgatcatcaatgaaagcaaagggtggggtaggaagttgtatgattcttg 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 taatgaagacatgatcatcaatgaaagcaaagggtggggtaggaagttgtatgattcttg 600
Query: 401 agtcacttaatgatcagagagaggggaccaagaagagaaagagagagagggggaggggga 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtcacttaatgatcagagagaggggaccaagaagagaaagagagagagggggaggggga 660
Query: 461 ggaggagggaga 472
||||||||||||
Sbjct: 661 ggaggagggaga 672
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_c22.g1 MSMg01no492_c22.g1 CHROMAT_FILE:
MSMg01no492_c22.g1 PHD_FILE: MSMg01no492_c22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:20 2005
(620 letters)
>mm_chr17_87376760_87377778
Length = 1019
Score = 1145 bits (592), Expect = 0.0
Identities = 613/620 (98%), Gaps = 1/620 (0%)
Strand = Plus / Minus
Query: 1 aaatgaaaagatttagacaggtcatgaagtgagtacaggtggtggtgccccgagagaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 aaatgaaaagatttagacaggtcatgaagtgagtacaggtggtggtgccccgagagaaca 895
Query: 61 catgtcactgtctggagacattctgattgccagagctggaggagggtactgttagcacat 120
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 894 catgtcactgtctggagacattttgattgccacagctggaggagggtactgttagcacat 835
Query: 121 gtggggaggacagcagacatgggtggctcttcctcacatcccagagtgcacaagacagcc 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gtggggaggacaacagacatgggtggctcttcctcacatcccagagtgcacaagacagcc 775
Query: 181 tcctcccaataaagagcaatagcccagcccacacataaacaaccccctcacgtacccatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 tcctcccaataaagagcaatagcccagcccacacataaacaaccccctcacgtacccatc 715
Query: 241 ttctatgtgctaaggagtagaaccttcagaaattccaagttagacttctttagtggtagg 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tcctatgtgctaaggagtagaaccttcagaaattccaagttagacttctttagtggtagg 655
Query: 301 ggttgagatgaaaggctaaaaacttctaaaaaacaaagatacaagaaagcaaggtccatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ggttgagatgaaaggctaaaaacttctaaaaaacaaagatacaagaaagcaaggtccatt 595
Query: 361 caaaggactaagctgtatctacagcaagcaccccacagagacacagacatcgattggctt 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 594 caaaggactaagctgtatctacagccagcaccccacagagacacagacatcgattggctt 535
Query: 421 gatggaagaaaagcttccttaactagactcagtcactcccaaaggcacacataccacagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 gatggaagaaaagcttccttaactagactcagtcactcccaaaggcacacataccacagt 475
Query: 481 caactaaactcagtcgctctgtagcataatactcctggactttcaaacacagggaagtgt 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 c-actaaactcagtcgctctgtagcataatactcctggactttcaaacacagggaagtgt 416
Query: 541 ggggcctaatatactgtatttttcctatatacacatacctatgataaaattcagtttata 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 415 ggggcctaatatactgtatttttcctatatacacatacctatgataaaattcagtttgta 356
Query: 601 gattagacataataaaaaaa 620
||||||||||||||||||||
Sbjct: 355 gattagacataataaaaaaa 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1019
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1009
Effective search space: 615490
Effective search space used: 615490
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
