BAC Information

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BAC

Clone NameMSMg01-492P09
Chromosome17 (Build37)
Map Location 90,446,332 - 90,446,790
singlet/doubletsinglet
Overlap geneNrxn1
Upstream geneFshr, LOC100043904, LOC100043906
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492P09.T7 (MSMg01no492_p09.b1)MSMg01-492P09.TJ (MSMg01no492_p09.g1)
ACCAG570593AG570594
length688689
length of high quality
(start - end)
225 (325 - 549)455 (86 - 540)
definitionCHROMAT_FILE: MSMg01no492_p09.b1 PHD_FILE: MSMg01no492_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:20 2005CHROMAT_FILE: MSMg01no492_p09.g1 PHD_FILE: MSMg01no492_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGCTGTTCCTAAAAATTGCGGCGCTAAACGACTCACTATTCAAAGAAGGA
GCGCGGAATTCCAGTTTCCAAAGAGAAGACCAAACCTACGAATAATAGGA
GTGGATGAGAATGAAGATTTTCAGCTCAAAAGACCAGCAAGTATCTTCAA
CAAAATTATAGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGA
ACATACAAGAAGCCTACAGAACCCCAAATAGACTGGACCAGAAAAGAAAT
TCCTCCCGACACATAATAATCAGAACAACAAATGCACTAAATAAAGATAG
AATACTAAAAGCAGTATGTGTTAAAAGGTCAAGTAACATATAAAGGCAAG
CCTATCAGAATTACACCAGATTTTTCACCAGAGACTATGAAAGCCAGAAG
AGCCTGGACAGATGTTATACAGACACTAAGAAAACACAAATTCTAGCCCA
GGCTACTATACCCAGCCAAACTCTCAACTACCATAGATGGAGAAACCAAA
GTATTCCATGACAAAACCAAATTCACACATTATCTTTCCACGAATCCAGC
CCTTCAAAGGATAATAACAGAAAAAAACCAGTACAAGGACAGAAACCACG
CCCTAGAAAAAGCAACACGATAATCCTTCATCAAACCTAAAAGAAGACAG
CCACAAGAACAGAATGCCAACTTTAACAACAAAAATAA
TTTCTCGAAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCAGACCCTACATG
TATGCATACCTACTTACACACACACACAAACACACACTCACTCACACAGA
TTCACACACATACACACATAGACTCATATACATCACAAACAGATTCACAC
ATAGACACATACACACACATTCATTGTCAGATTCCCTCAGAAGAATATGG
AAATCTACAATATTAGTGCCAGTGCTTTGCCCACTTGCTTAACTCAAAGC
TTTGAAATGAAAAATATTTCACATTTCCTTAATGGTAATATTCACCATAC
TTCATTCCCAGACATTGACCAACTTACAACAATCTCTTCCCATAATCTGA
TAGAAAACATCCATCCTTTTCAGCAGGTGTGCTCAGTCTCCTGTAGAAGG
TGGAAAGTAGATGGAATACTAAGAATTAGAGTAACAGAAAACCATCTCCA
AAGAACATACAAACTAGTCTGAACTGGTGTGAAGTCTAACTGAAATGCAA
CATTTCATTAAAATTTCAGCACACTCCAGACTCTGCAGTATATTGAATAA
TACATGCTTAAGACTGGTCATTTAACTTTGAATTTCATAAACACTCCTGG
ACTCCGTTCTTGGAGAATTGGAAGTCTTTGGCAGCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_p09.g1 MSMg01no492_p09.g1 CHROMAT_FILE:
MSMg01no492_p09.g1 PHD_FILE: MSMg01no492_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:20 2005
         (455 letters)



>mm_chr17_90445998_90446852
          Length = 855

 Score =  845 bits (437), Expect = 0.0
 Identities = 452/459 (98%), Gaps = 4/459 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gccagaccctacatgtatgcatacctacttacacacacacacaaacacacactcactcac 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 gccagaccctccatgtatgcatacctacttacacacacacacaaacacacactcactcac 734

                                                                       
Query: 61  acagattcacacacatacacacatagactcatatacatcacaaac----agattcacaca 116
           ||||||||||||||||||||||||||||||| |||||||||||||    |||||||||||
Sbjct: 733 acagattcacacacatacacacatagactcacatacatcacaaacacatagattcacaca 674

                                                                       
Query: 117 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tagacacatacacacacattcattgtcagattccctcagaagaatatggaaatctacaat 614

                                                                       
Query: 177 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 attagtgccagtgctttgcccacttgcttaactcaaagctttgaaatgaaaaatatttca 554

                                                                       
Query: 237 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catttccttaatggtaatattcaccatacttcattcccagacattgaccaacttacaaca 494

                                                                       
Query: 297 atctcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 356
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atttcttcccataatctgatagaaaacatccatccttttcagcaggtgtgctcagtctcc 434

                                                                       
Query: 357 tgtagaaggtggaaagtagatggaatactaagaattagagtaacagaaaaccatctccaa 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgtagaaggtggaaagtagatggaatactaagaattagagtaacagaaaaccatctccaa 374

                                                  
Query: 417 agaacatacaaactagtctgaactggtgtgaagtctaac 455
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agaacatacaaactagtctgaactggtgtgaagtctaac 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 855
Length adjustment: 10
Effective length of query: 445
Effective length of database: 845
Effective search space:   376025
Effective search space used:   376025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)