BAC Information

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BAC

Clone NameMSMg01-493F15
Chromosome17 (Build37)
Map Location 56,324,295 - 56,428,680
singlet/doubletdoublet
Overlap geneDpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1
Upstream geneLOC100043485, LOC677496, St6gal2, LOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e
Downstream geneArrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4, Safb2, Safb, 2410015M20Rik, Rpl36, Lonp1, LOC619718, Tmem146, Ranbp3, Ccpn-ps, AI662250, Ndufa11, Fut4-ps1, Nrtn, Dus3l, Gm546, Rfx2, Acsbg2, 1700061G19Rik, Mllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493F15.T7 (MSMg01no493_f15.b1)MSMg01-493F15.TJ (MSMg01no493_f15.g1)
ACCAG570891AG570892
length735740
length of high quality
(start - end)		652 (73 - 724)619 (73 - 691)
definitionCHROMAT_FILE: MSMg01no493_f15.b1 PHD_FILE: MSMg01no493_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:51 2005CHROMAT_FILE: MSMg01no493_f15.g1 PHD_FILE: MSMg01no493_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,428,372 - 56,428,680)(56,324,295 - 56,324,913)
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTATTCGAGAGGATCCGC
GGAATTCCACACTTCGTAGTGGAAGATGGCTTTGATTTCTAACCTTCCTC
AAGTGCTGGGGTGACAGGCATGTGCCATCACACTTGGTGTTTGTTGTTCT
GGGGCATCTGGAAGGCCCAGTCCCAGTTTTTTTTTTTTTAAAAGATTTAT
TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACGCACCAGAAGAG
GGCATCAGATCTCATTACTTTTGGTTGTGAGCCACCATGTGGTTGCTGGG
ATTTGAACTTCGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGA
GCCATCTCACCAGCCCCCAGCCCCAGTTTTTAACTGGTTTTTAAACAAAT
GATATCACCTACCTGTCCTAAAATTCAGACGCCAGGCTTCTACCTCTGTC
TGAACTCTGTCCTTAGTCCATTAAGCTTCCTGATCTTCTAACATTCTATG
TAAAGACAAGCAGACTCCGGCTGCAAGTGATGATTCAGTAGTTAAGAGCA
CTTCCTGTTCCCTCAAAGGACCGAGGCTCAGTTCTTAGCACCAGCTTCAG
GCTCCTTATGTAACCTAACTCCAGCTGCAGGGGTTTGACTCTCCTGAACT
CTGTGGCCGCTGCATGCACATAAGCAAAACTAAAN

CAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCCGGTTTTGCAGCTTCCTATAGGTCA
CAGGTGTTGCTATGCTGTTACCGGACCTAGAGCATGCCTGGCCAGCCCTC
TGCTGCTGAATAATTTTCCCATCTTTCCACTGGCCAGCGAGATGGAATAG
TGAGTAAAGGGCTTGCAGCCATGACTTCAGCCCTGGTCACTAGATGGTGG
TAGAACTGACTCCTAAAAGCTGTTCTCACTACATGTGAATTGGGGCAAGC
AGCCTTGCACAACAGAAAATAAGTATCTTAAAATTAGACTCTACGGCTAA
GTGATCCTCTATCTAGTTACAAGTACCTCATTTCCTCTCAAATGGCTGCT
GATGCCACCTTAGCCTGCCCCATCCCAGTCCTCCTGTAGTCCCTGAGCGG
TGCACCACAAAAGCCATCAGAGTAGTGGCGGGGTCCTCCTTTCCACCCCA
GCCTATGGGCTGCTGCAGTAAAGTGTCCCACAAGTGCTGTCAAAAGTGGC
AGCACCAGTGACATCTCAGCCTGCAGCCCTCACAGGAGCTGTCCACAGTG
GCTCATCTCCTCCCCAGCCTACCCCACCCCCAGCAGTCCCACAGAGATGT
CGCTTCAGCAAAAGCTGGCTGCAGCCAGAAAGGACTTTCCACCCTTAGCC
ATGGGCCTGATGCAGGGAAAGGGGGTGGGAAAAAAAAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_f15.b1 MSMg01no493_f15.b1 CHROMAT_FILE:
MSMg01no493_f15.b1 PHD_FILE: MSMg01no493_f15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:51 2005
         (652 letters)



>mm_chr17_56427983_56429034
          Length = 1052

 Score =  582 bits (301), Expect = e-170
 Identities = 307/309 (99%)
 Strand = Plus / Minus

                                                                       
Query: 344 cccagccccagtttttaactggtttttaaacaaatgatatcacctacctgtcctaaaatt 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 cccagccccagtttttaactggtttttaaacaaatgatatcacctacctgtcctaaaatt 639

                                                                       
Query: 404 cagacgccaggcttctacctctgtctgaactctgtccttagtccattaagcttcctgatc 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cagacgccaggcttctacctctgtctgaactctgtccttagtccattaagcttcctgatc 579

                                                                       
Query: 464 ttctaacattctatgtaaagacaagcagactccggctgcaagtgatgattcagtagttaa 523
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttctaacattctatgtaaagacaagcagactccggctgcaagtgatgattcagtagttaa 519

                                                                       
Query: 524 gagcacttcctgttccctcaaaggaccgaggctcagttcttagcaccagcttcaggctcc 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gagcacttcctgttccctcaaaggaccgaggctcagttcttagcaccagcttcaggctcc 459

                                                                       
Query: 584 ttatgtaacctaactccagctgcaggggtttgactctcctgaactctgtggccgctgcat 643
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 458 ttatgtaacctaactccagctgcaggggtctgactctcctgaactctgtggccactgcat 399

                    
Query: 644 gcacataag 652
           |||||||||
Sbjct: 398 gcacataag 390


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1052
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1042
Effective search space:   668964
Effective search space used:   668964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no493_f15.g1 MSMg01no493_f15.g1 CHROMAT_FILE:
MSMg01no493_f15.g1 PHD_FILE: MSMg01no493_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:51 2005
         (619 letters)



>mm_chr17_56324095_56325113
          Length = 1019

 Score = 1197 bits (619), Expect = 0.0
 Identities = 619/619 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccggttttgcagcttcctataggtcacaggtgttgctatgctgttaccggacctagag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttccggttttgcagcttcctataggtcacaggtgttgctatgctgttaccggacctagag 260

                                                                       
Query: 61  catgcctggccagccctctgctgctgaataattttcccatctttccactggccagcgaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgcctggccagccctctgctgctgaataattttcccatctttccactggccagcgaga 320

                                                                       
Query: 121 tggaatagtgagtaaagggcttgcagccatgacttcagccctggtcactagatggtggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggaatagtgagtaaagggcttgcagccatgacttcagccctggtcactagatggtggta 380

                                                                       
Query: 181 gaactgactcctaaaagctgttctcactacatgtgaattggggcaagcagccttgcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaactgactcctaaaagctgttctcactacatgtgaattggggcaagcagccttgcacaa 440

                                                                       
Query: 241 cagaaaataagtatcttaaaattagactctacggctaagtgatcctctatctagttacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagaaaataagtatcttaaaattagactctacggctaagtgatcctctatctagttacaa 500

                                                                       
Query: 301 gtacctcatttcctctcaaatggctgctgatgccaccttagcctgccccatcccagtcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtacctcatttcctctcaaatggctgctgatgccaccttagcctgccccatcccagtcct 560

                                                                       
Query: 361 cctgtagtccctgagcggtgcaccacaaaagccatcagagtagtggcggggtcctccttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgtagtccctgagcggtgcaccacaaaagccatcagagtagtggcggggtcctccttt 620

                                                                       
Query: 421 ccaccccagcctatgggctgctgcagtaaagtgtcccacaagtgctgtcaaaagtggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaccccagcctatgggctgctgcagtaaagtgtcccacaagtgctgtcaaaagtggcag 680

                                                                       
Query: 481 caccagtgacatctcagcctgcagccctcacaggagctgtccacagtggctcatctcctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caccagtgacatctcagcctgcagccctcacaggagctgtccacagtggctcatctcctc 740

                                                                       
Query: 541 cccagcctaccccacccccagcagtcccacagagatgtcgcttcagcaaaagctggctgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cccagcctaccccacccccagcagtcccacagagatgtcgcttcagcaaaagctggctgc 800

                              
Query: 601 agccagaaaggactttcca 619
           |||||||||||||||||||
Sbjct: 801 agccagaaaggactttcca 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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