BAC Information

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BAC

Clone NameMSMg01-493H09
Chromosome17 (Build37)
Map Location 26,545,241 - 26,545,863
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493H09.T7 (MSMg01no493_h09.b1)MSMg01-493H09.TJ (MSMg01no493_h09.g1)
ACCAG570975AG570976
length746754
length of high quality
(start - end)		646 (44 - 689)626 (71 - 696)
definitionCHROMAT_FILE: MSMg01no493_h09.b1 PHD_FILE: MSMg01no493_h09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:00 2005CHROMAT_FILE: MSMg01no493_h09.g1 PHD_FILE: MSMg01no493_h09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATATTGCGACTGGGTGAACACAGTCACTTTCCAGAGGTCAGGGG
TCAGGTAGCTGCCGGTCTTGGAGGTGGCATAAAAAGCGGCCTTGGCAAAG
TTGCTCAGGATGGCAGTGCAGCCTCTGGCTGAAGTGTAGTAGTCATCTAT
ACCGGCCATCATCAGTAGCTTCTTGGCACAGGAGCAGAGACAATGCCAGT
GCCTCTGGGGGCAGGGATGAGACGCACCAGCACAGAGCCACAGCGGCCTG
TCACCTTGCATGGAACAGTGTGGGGCTTGCCAATCTTGTTCCCCCAGTAG
CCTCTCCGCACAGGGACAATGGAAAGCTTGGCCAAGATGATGGCCCCTCG
GATGGCAGTGGCAACCTCCTTGGAGCACTTAACACCAAGATCAACGTGAC
CATCGTAGTCCCCAATAACGACGAATGCCTTGAACCTGGTCCACTGGCCA
GCCCGAGTCTGTTTCTGCACTGGCATGATTTTCAGAACCTCATCCTTTAG
GGACGCACCCAGGAAAAAGTCAGTGATCTCAGACTCCTTAATAGGCAGGG
AGAACAGGTAGATCTCCTCCAAGGACTTGATCTTCATGTCCTTAACCAGG
CGGCCCAGCTTGGTGACGGGGATCCACTGAAGGAAGAAACACCAATCAAA
GGGCTGCCTCTCGGTGCAGGGGCAAGCAGCCCGCCCCGCCAGCGGC

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTGTTTTTACTGCTGTTTTGGAATG
CCCTGTGTAACAGACTCCTGCTTCTATCACCTGAACATGGGATTTCAGGT
GTGTGCCATGCCTGACTTGAAGATATTTTTTGTGTGCCCACCTGCATGGT
TTTTGTTTTTGTGAGTGAGAGGGATAGGATCTCATGTAGCTCAGGCTGGC
CTCAAACTCTGTGTCGAGCCGAAAGTGACCTTGAATTTCTGATCTTCTTG
CCTCCCCACCCCAAGTGCTGGCGCTGGGATTATGGGTGTGCATAGTCATG
CCCAGTTCATGAGGTGCTGGGGTTTGAACTTGAAGTGTTGTGCATGCCAG
ACGAGCACTTTATGGACTGACCTGCATTCTGTCTCCGAAGATATTCTTCC
ATGTTGCTCTTTCCTTTAGCCTAGATCCTTCTGCCGCCGCTGTGATGGTG
TGGGCATGGTTCTGCTTCTCTATGGACAGCCAGCTGGACCAACACTAGTC
ATTAAAGACTGTCCTTATCCTATGCTTAGCACAAACCACACGTCTGTTTG
TGTCTGTCTTCTGTCTTCTACCCAACAGGTCTGGTCATTTATCCAAACAC
GAAGCCACAGTGTTTTAGTTAGTCTTATGATTGGCATTAATATCCAGGAA
AGTTAGAGAGGGCTGTGGGCATGGGGAAAGTGGTGAAAGGAGAGGAAAGT
GGNN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_h09.g1 MSMg01no493_h09.g1 CHROMAT_FILE:
MSMg01no493_h09.g1 PHD_FILE: MSMg01no493_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:00 2005
         (626 letters)



>mm_chr17_26545041_26546066
          Length = 1026

 Score = 1120 bits (579), Expect = 0.0
 Identities = 612/623 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttgtttttactgctgttttggaatgccctgtgtaacagactcctgcttctatcac 60
           |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tttgtttggttttactgctgttttggaatgccctgtgtagcagactcctgcttctatcac 260

                                                                       
Query: 61  ctgaacatgggatttcaggtgtgtgccatgcctgacttgaagatattttttgtgtgccca 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ctgaacatgggatttcaggtgtgtgccatgcctgacgtgaagatattttttgtgtgccca 320

                                                                       
Query: 121 cctgcatggtttttgtttttgtgagtgagagggataggatctcatgtagctcaggctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctgcatggtttttgtttttgtgagtgagagggataggatctcatgtagctcaggctggc 380

                                                                       
Query: 181 ctcaaactctgtgtcgagccgaaagtgaccttgaatttctgatcttcttgcctccccacc 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcaaactctgtgtcgagccgaaggtgaccttgaatttctgatcttcttgcctccccacc 440

                                                                       
Query: 241 ccaagtgctggcgctgggattatgggtgtgcatagtcatgcccagttcatgaggtgctgg 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 441 ccaagtgctggcgctgggattatgggtgtgtatagtcatgcccagttcatgaggtgctgg 500

                                                                       
Query: 301 ggtttgaacttgaagtgttgtgcatgccagacgagcactttatggactgacctgcattct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 ggtttgaacttgaagtgttgtgcatgccagacgagcactttatggactgacctgcactct 560

                                                                       
Query: 361 gtctccgaagatattcttccatgttgctctttcctttagcctagatccttctgccgccgc 420
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 atctccgaagatattcttccatgtcgctctttcctttagcctagatccttctgccgccgc 620

                                                                       
Query: 421 tgtgatggtgtgggcatggttctgcttctctatggacagccagctggaccaacactagtc 480
           |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgatggtgtgggcagggttctgctcctctatggacagccagctggaccaacactagtc 680

                                                                       
Query: 481 attaaagactgtccttatcctatgcttagcacaaaccacacgtctgtttgtgtctgtctt 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 681 attaaagactgtccttatcctatgcttagcacaaaccgcacgtctgtttgtgtctgtctt 740

                                                                       
Query: 541 ctgtcttctacccaacaggtctggtcatttatccaaacacgaagccacagtgttttagtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctgtcttctacccaacaggtctggtcatttatccaaacacgaagccacagtgttttagtt 800

                                  
Query: 601 agtcttatgattggcattaatat 623
           |||||||||||||||||||||||
Sbjct: 801 agtcttatgattggcattaatat 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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