BAC Information

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BAC

Clone NameMSMg01-493H13
Chromosome17 (Build37)
Map Location 23,791,354 - 23,791,983
singlet/doubletsinglet
Overlap genenone
Upstream geneENSMUSG00000046088, EG383218, EG433078, LOC100042679, A630033E08Rik, LOC671128, LOC665961, EG434701, LOC665976, LOC100042225, LOC100042234, EG665988, LOC100042248, Zfp40, LOC100042257, LOC100042261, Vmn2r-ps133, EG666002, EG638102, EG619697, EG619775, EG619788, Olfr752-ps1, EG666030, EG381070, Zfp213, Zfp13, Zscan10, LOC666062, Mmp25, LOC665757
Downstream geneBC038613, Thoc6, Hcfc1r1, Tnfrsf12a, Cldn6, Cldn9, EG666080, 1520401A03Rik, Pkmyt1, Paqr4, Kremen2, 9530082P21Rik, Flywch1, 2810417J12Rik, LOC100042865, Srrm2, Tceb2, Prss33, 4931440B09Rik, Prss32, Prss21, Dcpp1, LOC666157, Dcpp2, LOC620233, Dcpp3, Sbp, Sbpl, Tmprss8, Prss22, LOC100042414, LOC383225, Prss27, Kctd5, Pdpk1, Amdhd2, Atp6v0c, Tbc1d24, Ntn2l, 1600002H07Rik, Ccnf, Abca17, Abca3, Rnps1, Dci, Dnase1l2, E4f1, 1700012G19Rik, Gbl, 9930021D14Rik, LOC666299, Caskin1, Traf7, Rab26, Pkd1, Tsc2, Nthl1, Slc9a3r2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493H13.T7 (MSMg01no493_h13.b1)MSMg01-493H13.TJ (MSMg01no493_h13.g1)
ACCAG570983AG570984
length729744
length of high quality
(start - end)
630 (78 - 707)624 (75 - 698)
definitionCHROMAT_FILE: MSMg01no493_h13.b1 PHD_FILE: MSMg01no493_h13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:01 2005CHROMAT_FILE: MSMg01no493_h13.g1 PHD_FILE: MSMg01no493_h13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAGGACCTTCACAAGGGCATTCAATTCATACCCACTGAGCCATC
TCACCAGCCCCTTATTTTCCCCATCTTTGTCCAGGATGTGTCAGTGTGGA
CAGAACCATCTACTCAGGAAGAGTGTACAGATGGGACTCTGGAGTCTTTT
GGTATCTTATGCCTGTGTCTGTCACCTGCTGTCACCTGCTGTCAGAGGGA
TGCCATAGAGCAGCGCCTCCTCTGTGTGAGGGAGGCCTGGGACCCTGAGG
GCTAGAGCCTGTAATTCTTTTTTGTTCAGGTCCCTGGGCACTCCCTTTGT
ACTCAAAGCTGGGCCACTTCTCTGATGACAGTTGGAACTTGGGCAAGGAG
CTGTTTGTTGTGCCCTGAGGCTTCTTGACTTGGGGCACAAACCCAGAGAG
CTTCCTGAAGAAGTAGGAAGGACACCCTGGCTGGGTTCCTAAACTTGAAA
CCCAGAAGTTGCCACAGGCATCTCCAGGAAGGCTGAGCCCCTCCAGCCTG
TCTGCCCAGAGCCAGTTGGCAGAGCTCTGCTCTTTCAGATCTCTGGGCTC
CAGATAAAGACTGCTAGAGTCTGAGAAACCCAGCGCTGGTGATTTAGAGT
AATGCCTTTGCCTGCCTCAGGTCAGTTATCATTGATTGTAGCCAGAGTCT
TGTCGATGGCCAACCCCACTCCAGTAACG
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACGTAAGCATGATAAAA
GCAATCTACAGCAAACCAGTAGCCAACATCAGAGTAAATGGTGAGAAGAT
TGAAGCAATCCCACTAAAATCAGGGACTAGACAAGACTGTCCACTCTCCC
CATACCTATTCGACATTGTACTTGAAGTCCTAGCCAGAGCTATTCGACAA
GAAAAGGAGATCAAGGGGATACAAGTTGGAAAAGATGAAGTCAAAATATC
ACTTTTTGCAGATGATATGATAGTATATATAAGTGACCCTAAAAATTCCA
CCACAGAACTCCTAAACCTGATAAACAGCTTTGGTGAAGTAGCTGGATAT
AAAATTAACTCAAACAAGGCAATGGCCTTTCTCTACACAAAGAATAAACA
GGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAATA
ATATAAAATATCTTGGCGTGACTCTAAAAAAGGAAGTGAAAGTTCTGTAT
GATAAAAACTTCAAGTCTATGAAGAAAGAAATTAAAGATCTCAGAAGATG
GAAAGATCTCCCATGCTCATGGATTGGCAGTATCAACATTGTAAAAATGG
CTATCATGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAAAATT
CAACTCAATTCTTCAACGAATTAGAAAGAGCAATCTGCAGATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_h13.b1 MSMg01no493_h13.b1 CHROMAT_FILE:
MSMg01no493_h13.b1 PHD_FILE: MSMg01no493_h13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:01 2005
         (630 letters)



>mm_chr17_23791154_23792183
          Length = 1030

 Score = 1151 bits (595), Expect = 0.0
 Identities = 621/635 (97%), Gaps = 10/635 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattcatacccactgagccatctcaccagccccttattttccccatctttgtccaggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 caattcatacccactgagccatctcaccagccccttattttccccatctttgtccaggat 771

                                                                       
Query: 61  gtgtcagtgtggacagaaccatctactcaggaagagtgtacagatgggactctggagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 gtgtcagtgtggacagaaccatctactcaggaagagtgtacagatgggactctggagtct 711

                                                                       
Query: 121 tttggtatcttatgcctgtgtctgtcacctgctgtcacctgctgtcagagggatgccata 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 tttggtatctcatgcctgtgtctgtcacctgctgtcacctgctgtcagagggatgccata 651

                                                                       
Query: 181 gagcagcgcctcctctgtgtgagggaggcctgggaccctgagggctagagcctgtaattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gagcagcgcctcctctgtgtgagggaggcctgggaccctgagggctagagcctgtaattc 591

                                                                       
Query: 241 tttttt-----gttcaggtccctgggcactccctttgtactcaaagctgggccacttctc 295
                |     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 -----tgagaggttcaggtccctgggcactccctttgtactcaaagctgggccacttctc 536

                                                                       
Query: 296 tgatgacagttggaacttgggcaaggagctgtttgttgtgccctgaggcttcttgacttg 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 535 tgatgacagttggaacttgggcaaggagctgtttgttgtgccctgaggcttcttgactcg 476

                                                                       
Query: 356 gggcacaaacccagagagcttcctgaagaagtaggaaggacaccctggctgggttcctaa 415
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 gggcacaagcccagagagcttcctgaagaagtaggaaggacaccctggctgggttcctaa 416

                                                                       
Query: 416 acttgaaacccagaagttgccacaggcatctccaggaaggctgagcccctccagcctgtc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 acttgaaacccagaagttgccacaggcatctccaggaaggctgagcccctccagcctgtc 356

                                                                       
Query: 476 tgcccagagccagttggcagagctctgctctttcagatctctgggctccagataaagact 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tgcccagagccagttggcagagctctgctctttcagatctctgggctccagataaagact 296

                                                                       
Query: 536 gctagagtctgagaaacccagcgctggtgatttagagtaatgcctttgcctgcctcaggt 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gctagagtctgagaaacccagcgctggtgatttagagtaatgcctttgcctgcctcaggt 236

                                              
Query: 596 cagttatcattgattgtagccagagtcttgtcgat 630
           |||| ||||||||||||||||||||||||||||||
Sbjct: 235 cagtcatcattgattgtagccagagtcttgtcgat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1030
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1020
Effective search space:   632400
Effective search space used:   632400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)