BAC Information

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BAC

Clone NameMSMg01-493H20
Chromosome17 (Build37)
Map Location 17,767,071 - 17,767,697
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97, EG382161, LOC676238, EG626854, LOC100041965, Riok2, Lix1, LOC383297, Lnpep
Downstream geneEG665140, LOC100041519, EG626942, 4930546H06Rik, Has1, Fpr1, Fpr-rs2, LOC665183, LOC670250, EG665187, LOC546683, Fprl1, LOC627060, Fpr-rs4, EG637021, EG665210, Vmn2r92, EG665227, EG627132, LOC100041612, Vmn2r95, Vmn2r-ps114, EG433070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493H20.T7 (MSMg01no493_h20.b1)MSMg01-493H20.TJ (MSMg01no493_h20.g1)
ACCAG570996AG570997
length780771
length of high quality
(start - end)		632 (45 - 676)548 (72 - 619)
definitionCHROMAT_FILE: MSMg01no493_h20.b1 PHD_FILE: MSMg01no493_h20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:03 2005CHROMAT_FILE: MSMg01no493_h20.g1 PHD_FILE: MSMg01no493_h20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGTTTGGGTGCTGAGTTGGTATCAGTGAAACTTGATCCAGTAAG
TGATAAATAGAAATTATTTTCTGGGGCTAGAGAGATGGCTCAGCAGTTAA
GAGCACCGACTACTCCTGAGTTCAAATCCCAGCAACGACATGGTGGCTCA
CAACCATCCTTAACGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGAGA
GCTACAGTGTACTTACATATAATAAATAAATAGATCTTAAAAAACCATGA
AAACAAGCAAACAAAAAAGATAAATAAGTAAATAAACAAATATCTAAGTA
TATATATTTTTAAAAAGAAATTTCTGTATTTTAATTAAGTTCACATTTCT
CAGACTTTCTAATCATTTATCTTTATATTTATTAGGAAATCATCTAACGT
AAATCCTGGATAAATGACCTGTTTTTTGTTTGAGTATCTTGGTTTTGTGT
TTTTGTTTGCTTGTTTGGTTTTTTACTGATTCAATGTTGTTTATGAGAAA
TAAGAACTTACAGGGTCAACACTGTGAACCAATTTCTATCCCAAGGAGTT
TAGTATATAAAAAAATGTTAAACATATACAAATTACCATATAGATTATAA
TGGCTTCTGGGAATATTCTGGATTAGGTGTCCTAATTGAATTTCTTGCTA
AATATGGTGGTAAATAAATTTTGTTTTGATGTATAATGCTCTGAACTGTT
AGTATAAAAATCTAGTGAGTCAAAGGGAGA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAAT
GGGTTTATTTGAATTTCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATAT
TGGATATTAGTCTCCTATCAAATTTAGGATTGGTAAAAATTCTTTCCCAA
TCTGTTGGTGGCCTTTTTGTCTTATTGACAGTATCTTTTGCCCTACAGAA
GCTTTGCAATTTTATTAGGTGCCATTTGTCGATTCTTGATCTTACAGCAC
AGGCCATTGCTGATCTGTTTTGGAATTTTTCCCCTGTGCCCATATCTTCA
AGGCTTTCCCCCACTTTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTAT
GTCACTCTCTGTATTTTTATAAGTGTAGTTAACCTCCTTACATTGGAGGG
CTTTTTTGTAATACCTTCTGTAGATGTGGATTTGTAGATAGATATTGTTT
AAATTTGGCTTTATCGTGGAATATCTTACTATCTTCTGCTATGGTGATTG
AAAATTTTGCTGAGTATAGTAATCTGGACTGGCATCTTGTGGTATCTTGA
AGTCTATAGTATATCTGTCCAAGCCCTTCTGTATTTTTCAGTATCTGTTG
AGAAGTCAGGAGTAATTCTACTTAGTATGCCTTTATATGTTACCTGTTCT
TTTTACCTTGCAGATTTTATAATCTTTCTGCGTTCTGCATGTTTAGAGAA
TCTTTTCCTATTTGGTGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_h20.b1 MSMg01no493_h20.b1 CHROMAT_FILE:
MSMg01no493_h20.b1 PHD_FILE: MSMg01no493_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:03 2005
         (632 letters)



>mm_chr17_17766866_17767897
          Length = 1032

 Score = 1176 bits (608), Expect = 0.0
 Identities = 623/628 (99%), Gaps = 1/628 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagtttgggtgctgagttggtatcagtgaaacttgatccagtaagtgataaat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccaagtttgggtgctgagttggtatcagtgaaacttgatccagtaagtgataaat 265

                                                                       
Query: 65  agaaattattttctggggctagagagatggctcagcagttaagagcaccgactactcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 agaaattattttctggggctagagagatggctcagcagttaagagcaccgactactcctg 325

                                                                       
Query: 125 agttcaaatcccagcaacgacatggtggctcacaaccatccttaacgagatctgactccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agttcaaatcccagcaacgacatggtggctcacaaccatccttaacgagatctgactccc 385

                                                                       
Query: 185 tcttctggagtgtctgaagagagctacagtgtacttacatataataaataaatagatctt 244
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcttctggagtgtctgaagacagctacagtgtacttacatataataaataaatagatctt 445

                                                                       
Query: 245 aaaaaaccatgaaaacaagcaaacaaaaaagataaataagtaaataaacaaatatctaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 aaaaaaccatgaaaacaagcaaacaaaaaagataaataagtaaataaacaaatatctaag 505

                                                                       
Query: 305 tatatatatttttaaaaagaaatttctgtattttaattaagttcacatttctcagacttt 364
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tatatat-tttttaaaaagaaatttctgtattttaattaagttcacatttctcagacttt 564

                                                                       
Query: 365 ctaatcatttatctttatatttattaggaaatcatctaacgtaaatcctggataaatgac 424
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaatcatttatctttataattattaggaaatcatctaacgtaaatcctggataaatgac 624

                                                                       
Query: 425 ctgttttttgtttgagtatcttggttttgtgtttttgtttgcttgtttggttttttactg 484
           ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 625 ctgttttttgtttgagtatcttggttttgtgtttttgtttgtttggttggttttttactg 684

                                                                       
Query: 485 attcaatgttgtttatgagaaataagaacttacagggtcaacactgtgaaccaatttcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attcaatgttgtttatgagaaataagaacttacagggtcaacactgtgaaccaatttcta 744

                                                                       
Query: 545 tcccaaggagtttagtatataaaaaaatgttaaacatatacaaattaccatatagattat 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tcccaaggagtttagtatataaaaaaatgttaaacatatacaaattaccatatagattat 804

                                       
Query: 605 aatggcttctgggaatattctggattag 632
           ||||||||||||||||||||||||||||
Sbjct: 805 aatggcttctgggaatattctggattag 832


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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