ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCTGCTTTTCTTTCCAAGTCTTATATCATTAAATAGATTCTATGCCT
TGTGTTTTATTCCTCCCATATTAACTCTACCTGTCTATGAATGTCCTACT
TGACATGTTCAGTTGTTTAGATTTCGACCCTCACCTGAATCACCCTCACC
TCTTGTCTTTAGGCAGTTCCATGTGTGTTTCTAACTCATAAGTAAAAAGG
TGTCAGAATTATCATGTTAAGTTGTTGTGTTGAACCCTGACTCACAAAGA
GATTCTGTTTTCCTACAAAAAGCTTCACAATTAAAAGCTTAGAGTCATGT
GTTTAGAATTTAGGGTGCTCAATTTCTACCATCAATCTGCCTCCATAAAT
TTCCTTCACACTGCTCCATTTTCTGTTTACCCAGTTCTTGATTCATTCTC
TTATTTCTCCTCAGATACAGTAAAGTAACTCACTGTAGCCTCCCCTCCCA
ACCTGAAGCTGGCTGAACCAGACCTCGACTTTGCTGCCACTAAAGAGATT
ACCTAGGGTGGAGCCTTCCTCCCTAGATCACTCTATTGTTCAGCCACTGT
CGCTGCTGCTACCTGCTGGGAGTTGGCCTAGCTATTCTGGAGACTACATC
CTATCCTTCATGTGGTCACCTGCAACTGGGCTCCAAGGATGAATTGGCAG
GAATGGGCCCTCCCACTCCTTTATA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCAGTTCTGAGCCCCATTT
TTTAATGGGGTTATTTGATTTTCTGGGGTCCACCTTCTTGAGTTCTTTAT
ATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTT
TCCCAAACTGTTGGTGGTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTT
GCAGAAGCTTTGCAACTTTATGAGGTCCCATTTATCGATTCTCGATCTTA
CAGCACAAGCCATAGCTGTTCTATTCAGGAATTTTTCCCCTGTACCCATA
TCTTCGAGGCTTTCCCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGG
TTTTATGTGGGGTTCCTTAATCCACTTAGATTTGACCTTAGTACAAGGAG
ATAGGAATGGATCAAGTTGCATTCTTCTACATGATAACCTCCAGTTGTGT
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTTGC
TTCCTTGTATAAGATCAAGTGACCATAGGTGTGTGGGTCCATCTCAGGGT
CTTCAATTCTATTCTATTGGTCTACTTGTCTGTTGTTATACCAGTACCAT
GCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTTAGGGCAGGAATGGT
GATTCCACCAGAAGTTCTTTTATCCTGGAGN

Query= MSMg01no493_k14.b1 MSMg01no493_k14.b1 CHROMAT_FILE:
MSMg01no493_k14.b1 PHD_FILE: MSMg01no493_k14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:17 2005
         (688 letters)



>mm_chr17_41336426_41337513
          Length = 1088

 Score = 1249 bits (646), Expect = 0.0
 Identities = 649/650 (99%)
 Strand = Plus / Minus

                                                                       
Query: 17  gaattctgcttttctttccaagtcttatatcattaaatagattctatgccttgtgtttta 76
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattctgcttttctttccaagtcttatatcattaaatagattctatgccttgtgtttta 591

                                                                       
Query: 77  ttcctcccatattaactctacctgtctatgaatgtcctacttgacatgttcagttgttta 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ttcctcccatattaactctacctgtctatgaatgtcctacttgacatgttcagttgttta 531

                                                                       
Query: 137 gatttcgaccctcacctgaatcaccctcacctcttgtctttaggcagttccatgtgtgtt 196
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gatttcgaccctcacctgaatcaccctcacctcttgtctttaggcagttccatgtgtgtt 471

                                                                       
Query: 197 tctaactcataagtaaaaaggtgtcagaattatcatgttaagttgttgtgttgaaccctg 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctaactcataagtaaaaaggtgtcagaattatcatgttaagttgttgtgttgaaccctg 411

                                                                       
Query: 257 actcacaaagagattctgttttcctacaaaaagcttcacaattaaaagcttagagtcatg 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 actcacaaagagattctgttttcctacaaaaagcttcacaattaaaagcttagagtcatg 351

                                                                       
Query: 317 tgtttagaatttagggtgctcaatttctaccatcaatctgcctccataaatttccttcac 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tgtttagaatttagggtgctcaatttctaccatcaatctgcctccataaatttccttcac 291

                                                                       
Query: 377 actgctccattttctgtttacccagttcttgattcattctcttatttctcctcagataca 436
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 actgctccattttctgtttacccagttcttgattcattctcttatttctcctcagataca 231

                                                                       
Query: 437 gtaaagtaactcactgtagcctcccctcccaacctgaagctggctgaaccagacctcgac 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 gtaaagtaactcactgtagcctcccctcccaacctgaagctggctgaaccagacctcgac 171

                                                                       
Query: 497 tttgctgccactaaagagattacctagggtggagccttcctccctagatcactctattgt 556
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tttgctgccactaaagagattacctagggtggagccttcctccctagatcactctattgt 111

                                                                       
Query: 557 tcagccactgtcgctgctgctacctgctgggagttggcctagctattctggagactacat 616
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tcagccactgtcgctgctgctacctgctgggagttggcctagctattctggagactacat 51

                                                             
Query: 617 cctatccttcatgtggtcacctgcaactgggctccaaggatgaattggca 666
           ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 50  cctatccttcatgtggtcacctgcagctgggctccaaggatgaattggca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)