Query= MSMg01no493_o02.b1 MSMg01no493_o02.b1 CHROMAT_FILE:
MSMg01no493_o02.b1 PHD_FILE: MSMg01no493_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:35 2005
(674 letters)
>mm_chr17_78510936_78512009
Length = 1074
Score = 926 bits (479), Expect = 0.0
Identities = 518/531 (97%)
Strand = Plus / Minus
Query: 5 gaattcaccagcattaatttcttctgagtacatgtttgaataggcaaaggcatatgaata 64
||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 531 gaattcaccagcaaaaatttcttctgagtacatgtttgaataggcaaaggcgtatgaata 472
Query: 65 atgatatgttatataaaatataatgttaatgaaaatattaaactgcagataaactgaatg 124
| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct: 471 acgatatgttatataaaatataatgataataaaaatgttaaactgcagataaactgaatg 412
Query: 125 acaacaggcacttactaacaataagcagctgtgttctttcagttcaagttaagtagttta 184
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 411 acaacaggcacttactaacaataagcagctatattctttcagttcaagttaagtagttta 352
Query: 185 ccaatcttaatctttccaatattgttttatgtactaactaaaataggcaaaataatgaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccaatcttaatctttccaatattgttttatgtactaactaaaataggcaaaataatgaca 292
Query: 245 tttctttgacaattaacctttcagataacatacctctttgccccattttctgtaaatttg 304
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 291 tttctttgacaattaacctttcagataacatacctctttgccctattttctgtaaatttg 232
Query: 305 tatattcattaaaatttaaaagatgtatttattttacatgcataagtggtttacctcatg 364
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 tatattcattaaattttaaaagatgtatttattttacatgcataagtggtttacctcatg 172
Query: 365 gatatatgtgtaccaaccgcatggttggtgtctatgaaggtcagaaaatgacatcagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gatatatgtgtaccaaccgcatggttggtgtctatgaaggtcagaaaatgacatcagatc 112
Query: 425 ccttgaaaatgaagttgtggaggacgattgtgagacaccttgtgggtgctgggaacccaa 484
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 111 ccttgaaaatgaagttgtggaggacgattatgagacaccttgtgggtgctgggaacccaa 52
Query: 485 cttcatgttcatagaacaaacagaaagtgctctcaagcactgagctatttc 535
|||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 51 cttcatgttcatagaacaaacaaaaagtgctctcaagcactgagctatttc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o02.g1 MSMg01no493_o02.g1 CHROMAT_FILE:
MSMg01no493_o02.g1 PHD_FILE: MSMg01no493_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:35 2005
(670 letters)
>mm_chr17_78366864_78367933
Length = 1070
Score = 1203 bits (622), Expect = 0.0
Identities = 657/670 (98%), Gaps = 3/670 (0%)
Strand = Plus / Plus
Query: 1 ctgtaggagtggtaccctgccacaccacactggctgctcttgcagagaggcatgtgtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtaggagtggtaccctgccacaccacactggctgctcttgcagagaggcatgtgtgga 260
Query: 61 tggttatatacatggggccatgtgaatcaattttcacacatttacttattttaatatttt 120
||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||
Sbjct: 261 tggttatatacatggggccatgtgaatcagttttcacacacttacgtattttaatatttt 320
Query: 121 caatatcctcctagttgaggattaatgtcctacctaatttaaataaaatttcaagtaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatatcctcctagttgaggattaatgtcctacctaatttaaataaaatttcaagtaatt 380
Query: 181 tctctaatgttatacagctaattgacagtaatgggactattggtgaaataaaaacaaatt 240
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tctctaatattatacagctaattgacagtaatgggactattggtgaaataaaaaaaaatt 440
Query: 241 ataagaaatgttagcaaatatagcagtgtatgaagaacctgcaatgtttatgggaatgaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataagaaatgttagcaaatatagcagtgtatgaagaacctgcaatgtttatgggaatgaa 500
Query: 301 aaatgatgatgtagctggtagatacaatgatgcatagaggttcttcaagacttaaaaagg 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatgatgatgcagctggtagatacaatgatgcatagaggttcttcaagacttaaaaagg 560
Query: 361 aaactacaatgcaatatattattccatttcttgggatttttaagtcagaatctctgtacc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaactacaatgcaatatattattccatttcttgggatttttaagtcagaatctctgtact 620
Query: 421 atatctgcactcttaagttcatggaaactttatccactatatgtaagatatggaatcaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 621 atatctgcactcttaagttcatggaaactttatccactatatgtaagatatggaaacaac 680
Query: 481 ctaaatgtccactaattatccggatgaatatataaagagccatacaaatgaacaacaaca 540
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 681 ctaaatgtccactaattatccggatgaatatataaagagctatacaaatgaacaacaa-- 738
Query: 541 atgttggaagagaacttagtcaataacatgcttaaagaacctgagtttgatccctaaaac 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 -tgttggaagagaacttagtcaataacatgcttaaagaacctgagtttgatccctaaaac 797
Query: 601 ccacatttgaacaacaaaaaacctggtatgtgacatgagcttattgtgacttgtcatcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ccacatttgaacaacaaaaaacctggtatgtgacatgagcttattgtgacttgtcatcct 857
Query: 661 agtgctagag 670
|| |||||||
Sbjct: 858 agcgctagag 867
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
