Query= MSMg01no493_o20.b1 MSMg01no493_o20.b1 CHROMAT_FILE:
MSMg01no493_o20.b1 PHD_FILE: MSMg01no493_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:38 2005
(587 letters)
>mm_chr17_62612014_62613001
Length = 988
Score = 1062 bits (549), Expect = 0.0
Identities = 576/585 (98%), Gaps = 2/585 (0%)
Strand = Plus / Minus
Query: 5 gaattcattctcctgaccctctgggattctttcctatctccccccatacctgatcctgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 gaattcattctcctgaccctctgggattctttcctatctccccccatacctgatcctgcc 863
Query: 65 tccatttccctttcctcctcctttctttcacctaggaccccccc-ccctgcttcctgtga 123
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 862 tccatttccctttcctcctcctttctttcacctaggaccccccctctctgcttcctgtga 803
Query: 124 ttattttgttcccctattgagtgctttcaatgtcatttaaatcattggattttcagaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 ttattttgttcccctattgagtgctttcaatgtcatttaaatcattggattttcagaaat 743
Query: 184 atttctgtcttttgtatatccacttacctataatatcttacattacattcagatatggaa 243
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 742 atttctgtcttttgtatatccacctacctataatatcttacattacattcagatatggaa 683
Query: 244 aggttttctttgctgcccatataatcttttcccttgcttctttctcagtttatctcaaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aggttttctttgctgcccatataatcttttcccttgcttctttctcagtttatctcaaat 623
Query: 304 attttttcctatgtgggtgcttagcatttactgtcaatatatggttctttcttaaaatta 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attttttcctatgtgggtgcttagcatttactgtcaatatatggttctttcttaaaatta 563
Query: 364 cttagaataaatcctcatttttt-ctttttactattactgttcaactctacactcgggtg 422
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct: 562 tttagaataaatcctcatttttttctttttactattactgttcaactctacactcaggtg 503
Query: 423 aatcttcattaaagaatttctatacgatttgacatggatacattggtcatcaaatataat 482
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 502 aatcttcattaaagaatttctgtatgatttgacatggatacattggtcatcaaatataat 443
Query: 483 catagtgcaaacagtgttgaagaatatattatatagcaatcattaggtaagataggtaca 542
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 catagtgcaaacagtgttgaagaatatattatatagcaatcattaagtaagataggtaca 383
Query: 543 attctattatcaaaatttaattaaagaaggcaatactgcacagct 587
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 attctattatcaaaatttaattaaagaaggcaatactgcacagct 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 988
Length adjustment: 10
Effective length of query: 577
Effective length of database: 978
Effective search space: 564306
Effective search space used: 564306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_o20.g1 MSMg01no493_o20.g1 CHROMAT_FILE:
MSMg01no493_o20.g1 PHD_FILE: MSMg01no493_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:38 2005
(518 letters)
>mm_chr17_62441178_62442097
Length = 920
Score = 963 bits (498), Expect = 0.0
Identities = 514/520 (98%), Gaps = 2/520 (0%)
Strand = Plus / Plus
Query: 1 cataaatatctaacaaccaggctacttcaacacgaggaaacttcctcaggcataaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatatctaacaaccaggctacttcaacacgaggaaacttcctcaggcataaataca 260
Query: 61 agcaagcttcgaatgagtacaaaagcttggttaagactgttgaagaaccaggcacatagc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaagcttcgaatgagtacaaacgcttggttaagactgttgaagaaccaggcacatagc 320
Query: 121 cgtctcatttatgaatattcatattaaagtcccaattaaaagatcagaaaacagagaaag 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtctcatttatgaatattcatataaaagtcccaattaaaagatcagaaaacagagaaag 380
Query: 181 accaaaagatcacttcaccgcagtctttgattacaagatgtatagcttaacgttagaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accaaaagatcacttcaccgcagtctttgattacaagatgtatagcttaacgttagaaaa 440
Query: 241 tctattaatataactaatttaaaaaactaccacagaggccaagaggcctgttgaaccaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctattaatataactaatttaaaaaactaccacagaggccaagaggcctgttgaaccaca 500
Query: 301 ttggcagctactctgtagaacatttaaaactaaaagaaatatcattttgtaggcacaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggcagctactctgtagaacatttaaaactaaaagaaatatcattttgtaggcacaaaa 560
Query: 361 tttcaaacaggagcattttctctttgtttaatctaacatcatcaaataacataggaaaat 420
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcaaataggagcattttctctttgtttaatctaacatcatcaaataacataggaaaat 620
Query: 421 gttatttgaaattacaaaaaaaaaaa--caattccagaagccagagggatactaaattaa 478
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 621 gttatttgaaattacaaaaaaaaaaaaacaattccagaagccagagggatactaaattaa 680
Query: 479 tattcagaaactacattttcatatatgcaaatagccaatt 518
||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattcagaaactacattttcatatatgcaaatagccaatt 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 920
Length adjustment: 10
Effective length of query: 508
Effective length of database: 910
Effective search space: 462280
Effective search space used: 462280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
