TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACAGATGTCTATAGAACATTTTTTCCTAAAACAAAAGAATATACCTC
TTCCCAGCACCTCACAGTACCTTCTCTGAAATTGACCATATAATTGAAAA
CAAAACAGGCCTCAACAGATACAAAAAGATTGAAATTATCCCAGGCATCC
TATCAGATCATCAGGGACTAAGACTGGTCTTCATTTAAAAAAAAAAATAG
TAGAATGCCTACATACATGTGGAAGCAGAAAAAAACTCTACTCAGTGATA
ACCTGGTCAAGGAAGAAATAAAGAAAGAAATTAAAGGCTTTTTAGAATTT
AATGAAAAAGAAGCCACAACATTACCAAAGTTATGGGACACAAAGAAAGC
ATTGTTAAGAGGAAAATTCATAGCTATAAGTGCCTCCAAAAAGAAAGTGG
AGAGGGCATACACTAGCAACTTGCCAGCACAACTGAAAGATTTAGAACAA
AAAGAAGCAAATTCACCTAAGAGGACTTGATGGCAGGAAATAATCAAACT
CAGGGCTGAAATCAACCAAATAGAAACAAGGAGAACTATACAAAGAATCA
ACAAACCTGAAGCTGGTTCTTTGTGAAAATCAACAAGATAGGTAAATCCT
TTTCCAGACTAACCAGAGGGCACAGAGAGAGTATCAAATTCAACAAAATC
AGAAGTTAAAAGGGTGGCATAACAACTGAAAATGAGGAAAATCTAAAAAA
AAAATCAGAA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTTTCTTCTCTATCCTCTATATGTGATTTG
TTATTTTTCACAATAACCTATCTTAGGCAGAGATTTTATAAAAGAAAAAT
AAAAAAAAGAGAAAAAGAAAAGAAACAAAAAGAAAACTACCAAAGAATGT
GTATCAGAGACAAGAAGCATTTGCGGTTTTTTTTTTGTTTTGTTTTTTGT
TTTTTGTTTTTTTTTTCCTAGTAAATTTTGGAAGCTCATGAATATAACCA
GTAAGTTGTATGTCTGATATAAGCCCATTACCTGGCTTTCAAACACCTTT
TCAGTGTAACTTTATGTGGTGGGAAAAGTTCTGAAAGTTTAATATTTTTA
AGAACATTGATCACATCAGAGCAACTCCATTTTAATGGCATCATCCAAGT
CTCATAACCTTGATGGTCCCAAACTTTCAAGAATTATCACATTGAGGAAT
ATAGTTTCAAGATACAAATTTTGTGTGGCACACAAATATTTGGCCCATAG
CAAAAGCTAAAATCCAATCATGATACAAGTTTAACTTTAAAGTGTTCCCC
AATACATTTAATGAAGCTGTTTGTTTCATATAGGTGTGTGTAATAAGATA
TATTAAGTTAGGAGTCAGACAAGTTTAACAGAGCACTGATACCAGATTGC
ATGTTCCTTGGCTAAAATTATGCTTTGTTTCCATAGTTGGCTAGATGTTG
ACTGA

Query= MSMg01no493_p06.g1 MSMg01no493_p06.g1 CHROMAT_FILE:
MSMg01no493_p06.g1 PHD_FILE: MSMg01no493_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:40 2005
         (686 letters)



>mm_chr17_93461696_93462784
          Length = 1089

 Score =  731 bits (378), Expect = 0.0
 Identities = 399/406 (98%), Gaps = 3/406 (0%)
 Strand = Plus / Minus

                                                                        
Query: 284  agtgtaactttatgtggtgggaaaagttctgaaagtttaatatttttaagaacattgatc 343
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1089 agtgtaactttatgtggtgggaaaagttctgaaggtttaatatttttaagaacattgatc 1030

                                                                        
Query: 344  acatcagagcaactccattttaatggcatcatccaagtctcataaccttgatggtcccaa 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 acatcagagcaactccattttaatggcatcatccaagtctcataaccttgatggtcccaa 970

                                                                        
Query: 404  actttcaagaattatcacattgaggaatatagtttcaagatacaaattttgtgtggcaca 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969  actttcaagaattatcacattgaggaatatagtttcaagatacaaattttgtgtggcaca 910

                                                                        
Query: 464  caaatatttggcccatagcaaaagctaaaatccaatcatgatacaagtttaa-ctttaaa 522
            ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 909  caaatatttggcccatagcaaaagctaaaattcaatcatgatacaagtttaaactttaaa 850

                                                                        
Query: 523  gtgttccccaatacatttaatgaagctgtttgtttcatataggtgtgtgtaataagatat 582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849  gtgttccccaatacatttaatgaagctgtttgtttcatataggtgtgtgtaataagatat 790

                                                                        
Query: 583  attaagttaggagtcagacaagtttaacagagcactgataccagattgcatgttccttgg 642
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 789  attaagttaggagtcagacaagttaaacagagcactgataccagattgcatgttccttgg 730

                                                          
Query: 643  ctaaaa-ttatgctttgtttccatagttggctagatgtt-gactga 686
            |||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct: 729  ctaaaaattatgctttgtttccatagttggctagatatttgactga 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 686
Length of database: 1089
Length adjustment: 10
Effective length of query: 676
Effective length of database: 1079
Effective search space:   729404
Effective search space used:   729404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)