Query= MSMg01no494_f06.b1 MSMg01no494_f06.b1 CHROMAT_FILE:
MSMg01no494_f06.b1 PHD_FILE: MSMg01no494_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:09 2005
(569 letters)
>mm_chr17_17596919_17597894
Length = 976
Score = 967 bits (500), Expect = 0.0
Identities = 552/572 (96%), Gaps = 7/572 (1%)
Strand = Plus / Minus
Query: 5 gaattcaggctgtaatatcaaagact---gtgtggtcagaagcatggaaagaagtattca 61
|||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct: 776 gaattcaggctggaatatcaaagactggagtgtggtcagaagcatgaaaagaagtattaa 717
Query: 62 ataaactagaactgcctagaatttgctcaatcgttctgcattacagcggaactctttaac 121
|||| |||||||||||||||||||||||| |||||||||| ||||| |||||| ||||||
Sbjct: 716 ataacctagaactgcctagaatttgctcagtcgttctgcaatacagtggaactttttaac 657
Query: 122 aaacaaggatctcaggtgattctgtgtacatgtttcacatacagtatat---aaaaggag 178
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 656 aaacaaggatctcaggtgattctgtgtagatgtttcacatacagtatataaaaaaaggag 597
Query: 179 tccaccctgggcagagtctggatcagatgacttgttagttatattgaaaaacaccaagga 238
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 596 tccaccctgggcagagtctggatcagatgacttgttagctatattgaaaaacaccgagga 537
Query: 239 gattagactagtttgtgatagcatttccaagggtaattaggccatgagagctctgaccta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gattagactagtttgtgatagcatttccaagggtaattaggccatgagagctctgaccta 477
Query: 299 actaatggattaatgccttcacggatttataataggacggtattgttgggagttcatagg 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 476 actaatggattaatgccttcacggatttataataggatggtattgttgggagttcatagg 417
Query: 359 ggatggacactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgcca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggatggacactggttggggtatgtcactgaaagtgtgtctgtcggggctgtattttgcca 357
Query: 419 tggtttcttcttgtattcatctttttt-gttttttagctgtcaatgtaaactgaccctcc 477
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 356 tggtttcttcttgtattcatctttttttgttttttagctgtcaatgtaaactgaccctcc 297
Query: 478 tcccctgtgtatgtatgcgcacacatctgtgtgtacacttttcctcttttagttcggagt 537
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 tcccctgtgtatgtgtgcgcacacatctgtgtgtacacttttcctcttttagttcggagt 237
Query: 538 gacagagaaaacatgttcaaggaaaagtatct 569
||||||||||||||||||||||||||||||||
Sbjct: 236 gacagagaaaacatgttcaaggaaaagtatct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 976
Length adjustment: 10
Effective length of query: 559
Effective length of database: 966
Effective search space: 539994
Effective search space used: 539994
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_f06.g1 MSMg01no494_f06.g1 CHROMAT_FILE:
MSMg01no494_f06.g1 PHD_FILE: MSMg01no494_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:09 2005
(578 letters)
>mm_chr17_17370447_17371428
Length = 982
Score = 890 bits (460), Expect = 0.0
Identities = 552/584 (94%), Gaps = 7/584 (1%)
Strand = Plus / Plus
Query: 1 actctggatgtagaccaggctggcctcgacctcagaaatctgcctgcctctgcctcccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 actctggatgtagaccaggctggcctcgacctcagaaatctgcctgcctctgcctccaga 260
Query: 61 gtgctgggattaaaggcgtgagaaaccacgcccggctggcatacatcttcttatgtcttc 120
|||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||
Sbjct: 261 gtgctgggattaaaggcgtgtgccaccaggcccggctggcatacatcttcttatgtcttc 320
Query: 121 agtcaggcatactatagggctggctcgcccacattctttaaatgcttaaggtttaccacc 180
||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct: 321 agtcaggaatactatagtgctggctctcccacattctttaaatgcttaaggtttacc-tc 379
Query: 181 ca-tatggattttgtggctacttttatgattttatgtattcgttaaatactttctagggt 239
|| ||||||||||||||| |||||||||||| || |||||||||||||||||||||| |
Sbjct: 380 cagtatggattttgtggcgacttttatgattacatatattcgttaaatactttctaggtt 439
Query: 240 cattaca---gttacgttttattcctatac-tattatgatatatactgaaaatcagctga 295
| ||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 440 ccttacagttgttacgttttattcctatacatattatgatatatactgaaaaccagctga 499
Query: 296 gacattcagccacatggactgaacaaccactggattgctcaacttcccattggtatagag 355
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aacaatcagccacatggactgaacaaccactggattgctcaacttcccattggtatagag 559
Query: 356 ttatagttggaagagttggctatcagcttgtgagccatactaataaatccactttccaca 415
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 560 ttatagttggaagagttggctatcagcttgggagccatactaataaatccactttccaca 619
Query: 416 tacatagagagaccctagagcattttcctagtacacctgtgtttttggtttattttaaga 475
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 620 taaatagagagaccctagagcattttcctagtacagctgtgtttttggtttattttaaga 679
Query: 476 ttttattt-tattttttggcactttcctactgaggaatagaaaatagaatagtagattat 534
|||||||| | |||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 680 ttttatttattttttttggcactttcctactaaggaaaagaaaatagaatagtagattat 739
Query: 535 agaataacaatagagctccagctggaaagtttgtgcaatttacc 578
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaataacaatagagctccagctggaaagtttgtgcaatttacc 783
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 982
Length adjustment: 10
Effective length of query: 568
Effective length of database: 972
Effective search space: 552096
Effective search space used: 552096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
