Query= MSMg01no494_j10.b1 MSMg01no494_j10.b1 CHROMAT_FILE:
MSMg01no494_j10.b1 PHD_FILE: MSMg01no494_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:27 2005
(540 letters)
>mm_chr17_52402260_52403199
Length = 940
Score = 702 bits (363), Expect = 0.0
Identities = 424/457 (92%), Gaps = 24/457 (5%)
Strand = Plus / Plus
Query: 106 aaatcactcccccacacaccaatataccacttgcattcttatgtttctttcaggtgcttt 165
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaataactcccccacacaccaatataccacttgcattcttatgtttctttcaggtgcttt 345
Query: 166 tagatccaccacaagaatc-aggtttcattctgctcttgagaatgcttgcaatggcccca 224
||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 346 tagatccaccacaagaa-ctaggtttcattctgctcttgaggatgcttgcaatggcccca 404
Query: 225 tttaaaaatcaggtaacatggtaaaaaaaaaattgattaggggatctgctggcatcctga 284
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 405 tttaaaaatcaggtaacatggtaaaaaaaaaattgattaggggatctgatggcatcctta 464
Query: 285 gtaactgttataaggggaggccttctgctcaaatatgattgattggggggtaaatggcag 344
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 465 gtaactgttataaggggaggccttctgctcaaatatgattgattggggg-taaatggcag 523
Query: 345 tgtctcgaatgttcctaaagaataatagtttggccaatcctgactaatgtaaac------ 398
||| || |||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 524 tgtttcaaatgttcctaaagaataatagtttggccaatcctgactaacgcaaactcttta 583
Query: 399 -attgcactgcagaatgagttcttcatgaagtcctcaaactttttttttttttt------ 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 cattgcactgcagaatgagttcttcatgaagtcctcaaactttttttttttttttttttt 643
Query: 452 --------gagttcatgctttggtagaggaggtctttagcactggtgctatgaagatgga 503
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ttttttttgagttcatgctttggtagaggaggtctttagcactggtgctatgaagatgga 703
Query: 504 taggcattattcctgttccctaagcactcatgcaagt 540
||||||||||| |||||||||||||||||||||||||
Sbjct: 704 taggcattatttctgttccctaagcactcatgcaagt 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_j10.g1 MSMg01no494_j10.g1 CHROMAT_FILE:
MSMg01no494_j10.g1 PHD_FILE: MSMg01no494_j10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:28 2005
(622 letters)
>mm_chr17_52459655_52460676
Length = 1022
Score = 1180 bits (610), Expect = 0.0
Identities = 619/622 (99%)
Strand = Plus / Minus
Query: 1 acttagaatttttgaaaagcttagagatgtagacaccatatcttgtaaccactatgcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 acttagaatttttgaaaagcttagagatgtagacaccatatcttgtaaccactatgcttt 763
Query: 61 gttttatccacagggggttgggagttgtccatggtttcagcctcggtcagcaacagctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gttttatccacagggggttgggagttgtccatggtttcagcctcggtcagcaacagctag 703
Query: 121 ctctatctttagagtggacaggaatgtttattagacatttagtttcacatagctcaaaca 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ctctatctctagagtggacaggaatgtttattagacatttagtttcacatagctcaaaca 643
Query: 181 gaaatcgattcttgttttaaaatagacaatattaactaaaaatcagccatgcatcatgcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaaatcgattcttgttttaaaatagacaatattaactaaaaatcagccatgcatcatgcc 583
Query: 241 tccatggagttatggactacacaagggataggtttatgcttcatccaaggtccttatagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tccatggagttatggactacacaagggataggtttatgcttcatccaaggtccttatagc 523
Query: 301 tcctgttccctgctgttgtaccaactgggaaatttttaattgtcatctcttggcctggca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcctgttccctgctgttgtaccaactgggaaatttttaattgtcatctcttggcctggca 463
Query: 361 gatggccaaccccctgttctctgctggcaccataactaatgacaaagtcactgtgggatg 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gatgaccaaccccctgttctctgctggcaccataactaatgacaaagtcactgtgggatg 403
Query: 421 tcacacagaagcctagaagcagcccttggaactggccaccgcattacttgttccttacac 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 402 tcacacagaagcctagaagcagcccttggaactggccaccacattacttgttccttacac 343
Query: 481 tggtcctacctgctcctttcctttacctccagggaagagcaccctgatccattgcctagt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tggtcctacctgctcctttcctttacctccagggaagagcaccctgatccattgcctagt 283
Query: 541 gtgacattccttgtctcagaatccactcctagggaactgaaccgagagggcctatatcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtgacattccttgtctcagaatccactcctagggaactgaaccgagagggcctatatcat 223
Query: 601 gatggcttcaccaaaaccaaga 622
||||||||||||||||||||||
Sbjct: 222 gatggcttcaccaaaaccaaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
