BAC Information

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BAC

Clone NameMSMg01-495P20
Chromosome17 (Build37)
Map Location 40,656,948 - 40,657,351
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043300, EG668200, LOC672857, LOC627695, LOC634967, Pgk2, Crisp3, Crisp1, LOC668229
Downstream geneLOC100043756, EG433107, EG619517, Crisp2, Rhag, 9130008F23Rik, EG435528, Cenpq, Mut, Ldha-ps3, LOC627577
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-495P20.T7 (MSMg01no495_p20.b1)MSMg01-495P20.TJ (MSMg01no495_p20.g1)
ACCAG572903AG572904
length744767
length of high quality
(start - end)
404 (329 - 732)515 (79 - 593)
definitionCHROMAT_FILE: MSMg01no495_p20.b1 PHD_FILE: MSMg01no495_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:10 2005CHROMAT_FILE: MSMg01no495_p20.g1 PHD_FILE: MSMg01no495_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAACACGAGCC
GCGGAATTCTTCCCTAGCTCAACACTTTAAAGGGAATAAAGGAAAATCCA
CTGGAGAAAAATACAGCAAAATTAAATAGTAGATTGCTGACCCACCAAAC
AGATTCTGGGAAATTACTCAAGGGTGCTATCCCATGTCATTCTGTTAAAT
ATTCTGGTGAGAAAAGCATAACATAAAACAAACTCTGCTCTCAAAAAACT
CTGCTAGGAACAATAGCCAGTGAAGCGCAACCATTTCTGGCCTCATTCAT
TACAAGCCTCGCCCTCCATGCTTTGTTATCTGAAGACTCTTGAGAAGCAC
AGAGAAAGGCACAGGAGCCTGAAAGAGGAGTGAACCGGTACGAAAGCCTA
TGGAAAAAGGTAGCTGTTGCCTGTGCTTGGGTTCTACTAGCTGGGCTGCT
TTGTCTGACCTCAGTGGGAGAGGAAATGTCTAGCCTCCCAGTGACTTGAT
GCTCCAGGTTGGGGGAGGGGTACACCCAGGGGGGACCCTACCCTCCCAGA
GGAGAAGGAAAGAGGGGACTGTGAGAGGAGGTGACCAGGAAGGGACAGTA
AGCCAGGTGTAAACTGAATAAGTTAAAAAGACCAAAAAACTGTTTAAGCC
AAGCCTGTAGACTGTAAGAGCAGGTTCCATGACAAGATGACAGTATTTAC
AATGCTAAGATTTCAGTGGCTAGTGACACATCAGAGCCTCACTC
NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGTCCCGCGCACTTCTGGACGAAATTCAAAACAGTCT
ATCAGAGATAAAGCGGGAAGAGAGAGCAGGAGCAAAGAGGAAACATGGTG
CACCAATTAAGCATACAGGCCTTTCCACGAGTCTCAAACCCGAGGAAAAG
ATCATGTCAGGGAAGAATACCTGGGGAGAGTTTGGAAGGAAGGAGAAGGA
AAAAGATAAGAAAAAAGATCAATCAGGGGAGGTTTCTAGGAGAAGGAACC
TATACCTGCCACTAGATGAGTTTATTTTTCTAGCTCTTAATAGCTCAGAA
TCAGATGAAGGACTTAGTTCCTCTGAATAAACGGACTTGGAGGAGGAAGC
AGTTCGTTATAAGGGAGAAAGGTACCACAGCAAGATAAAATGCAAGCTAC
TCAGTCCAGAAAAAGGCAAAAAGTGCCTGGTGAAAGCCAGCTTGCTGCTT
GGCCTCCGACTGTCGGCTTCAGGGTCCTAGTGCACCTCCGCCCTATGTGC
AGAGGTTCCATTCAGAACCTTATGTGCAGAGATACCATTCAGACTCGTTC
ATTCCAAAAGAGGAACTGAGGAAAACGCAACAGGCATTTCCAGTTTTTGA
GGGAGCTGAGGGAGGGCGAGTTCACGCTCCGGTAGAGTATATACAGATTA
AGGAGCTCGCTGAAGCAGTCCGTAATTATGGAGTCAGCGCTAATTTCACT
GTAGCACAAGTCGAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no495_p20.b1 MSMg01no495_p20.b1 CHROMAT_FILE:
MSMg01no495_p20.b1 PHD_FILE: MSMg01no495_p20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:10 2005
         (404 letters)



>mm_chr17_40656748_40657551
          Length = 804

 Score =  719 bits (372), Expect = 0.0
 Identities = 396/404 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgaagactcttgagaagcacagagaaaggcacaggagcctgaaagaggagtgaaccgg 60
           ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 tctgaagactcttaagaagcacagagaaaggcacaggagcctgaaagaggagtgaaccag 260

                                                                       
Query: 61  tacgaaagcctatggaaaaaggtagctgttgcctgtgcttgggttctactagctgggctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacgaaagcctatggaaaaaggtagctgttgcctgtgcttgggttctactagctgggctg 320

                                                                       
Query: 121 ctttgtctgacctcagtgggagaggaaatgtctagcctcccagtgacttgatgctccagg 180
           |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 321 ctttgtctgacctcagtgggagaggaaatgcctagcctcccagagacttgatgctccagg 380

                                                                       
Query: 181 ttgggggaggggtacacccaggggggaccctaccctcccagaggagaaggaaagagggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ttgggggaggggtacacccaggggggaccctaccctcccagaggagaagaaaagagggga 440

                                                                       
Query: 241 ctgtgagaggaggtgaccaggaagggacagtaagccaggtgtaaactgaataagttaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgagaggaggtgaccaggaagggacagtaagccaggtgtaaactgaataagttaaaa 500

                                                                       
Query: 301 agaccaaaaaactgtttaagccaagcctgtagactgtaagagcaggttccatgacaagat 360
           ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 501 agaccaaaaaagtgtttaagccaagcctttagactgtaagagcaggttccatggcaagat 560

                                                       
Query: 361 gacagtatttacaatgctaagatttcagtggctagtgacacatc 404
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacagtatttacaatgctaagatttcagtggctagtgacacatc 604


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)