Query= MSMg01no496_c15.b1 MSMg01no496_c15.b1 CHROMAT_FILE:
MSMg01no496_c15.b1 PHD_FILE: MSMg01no496_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:24 2005
(675 letters)
>mm_chr17_5723940_5725014
Length = 1075
Score = 1241 bits (642), Expect = 0.0
Identities = 666/674 (98%), Gaps = 4/674 (0%)
Strand = Plus / Plus
Query: 5 gaattcttctctctctc-acccttctccaca-cactagctaagagagaagagggggatac 62
|||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 203 gaattcttctctct-tccacccttctccacaacactagttaagagagaagagggggatac 261
Query: 63 aaagtgaaggaaagagtcctgaataaggtcagaggtcagaaagctggagat-gttattgt 121
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 262 aaagtgaaggaaagagtcctgaataaggtcagaggtcagaaagctggagattgttattgt 321
Query: 122 tagacaacttcctgctgattaggggcattgagttccttggggcaaatttcatctttgctc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagacaacttcctgctgattaggggcattgagttccttggggcaaatttcatctttgctc 381
Query: 182 tcaggatgtctaatttcttcttgtttcttcttggcacatgactacttaacaaacttctac 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tcaggatgtctaatttcttcttgtttcttcttggcacatgactacttaacaaacttctac 441
Query: 242 caacaacaaccaagatcccaacaacaatccacttctctgtgccccagaatttgtataccc 301
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 442 caacaacaaccaagatcccaacaacaatccactactctgtgccccagaatttgtataccc 501
Query: 302 tctgaaaagtccccagaattccaaatgtcacacaattgcagaaactatctgcagctgaca 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tctgaaaagtccccagaattccaaatgtcacacaattgcagaaactatctgcagctgaca 561
Query: 362 aaatcacgcccctgctagagaacgaggcaaatcatagtcagctgctgcagacaatctaat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaatcacgcccctgctagagaacgaggcaaatcatagtcagctgctgcagacaatctaat 621
Query: 422 gtagccccatatctcacacctgggattaaaataaaaacatgtttttataatatttctgtg 481
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 622 gtagccccatatctcacacctgggattaaaataaaaccatgcttttataatatttctgtg 681
Query: 482 tttttcaaagaagccaaaaccccaaattcctcacaacaccaaggtctctaggaaggagca 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttttcaaagaagccaaaaccccaaattcctcacaacaccaaggtctctaggaaggagca 741
Query: 542 cccagcctgattctacgctcagagtcaccctgcaggtcataggcatagttctcactcacc 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 cccagcctgattctacgctcagagtcaccctgcaggtcataggcatagttctcactcacc 801
Query: 602 tcataaactgagatcagacagtccacagaggttaccccatgggagggggaagcttgtggt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tcataaactgagatcagacagtccacagaggttaccccatgggagggggaagcttgtggt 861
Query: 662 gagacagtcctcag 675
||||||||||||||
Sbjct: 862 gagacagtcctcag 875
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no496_c15.g1 MSMg01no496_c15.g1 CHROMAT_FILE:
MSMg01no496_c15.g1 PHD_FILE: MSMg01no496_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:24 2005
(663 letters)
>mm_chr17_5913399_5914463
Length = 1065
Score = 1154 bits (597), Expect = 0.0
Identities = 643/665 (96%), Gaps = 14/665 (2%)
Strand = Plus / Minus
Query: 1 agttccaggagattcagagcccttttctggctcctgtggttatgaggcatgtatgtggta 60
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 765 agttccaggagattcagagcccttttctggctcctgtgggcatgaggcatgtatgtggta 706
Query: 61 cacagacatgcatgccagcaaaacacccatactctgaacacacagaggaaacaagtccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 cacagacatgcatgccagcaaaacacccatactctgaacacacagaggaaacaagtccag 646
Query: 121 aaacaaatcacacaaataaatggtccagggaatctgtacaaagagcagatgcggtttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 aaacaaatcacacaaataaatggtccagggaatctgtacaaagagcagatgcggtttatt 586
Query: 181 tgggaaaggagtccttctgagcatctgaggcaaagaagtgaagcgtgacctctg-tgtgc 239
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 585 tgggaaaggagtccttctgagcatctgaggcaaacaagtgaagcgtgacctctgctgtgc 526
Query: 240 tctc-gtattcaacttccatgcaaagcacatcagacacgcatgcagaatccaactatcaa 298
|| | | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tcccagcacacaacttccatgcaaagcacatcagacacgcatgcagaatccaactatcaa 466
Query: 299 acttaggaagacgcatcatgagctgaagtcagaccgagagatttcagatgcacagttcat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 acttaggaagacgcatcatgagctgaagtcagaccgagagatttcagatgcacagttcat 406
Query: 359 aaacccccgacctacagatgctaaggtctgaaatgaatgcctcctgcagacaccggagct 418
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aaacccccaacctacagatgctaaggtctgaaatgaatgcctcctgcagacaccggagct 346
Query: 419 caaggctgagacaccagcttgtgggactttaggcggagcattccctggattgccacctcc 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 caaggctgagacaccagcttgtgggactttaggcggagcattccctggattgc------- 293
Query: 479 tgtgccgcctcctctccactttctgatctaccatgcacaggcacagagaaacctctaaga 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 --tgcc---tcctctccactttctgatctaccatgcacaggcacagagaaacctctaaga 238
Query: 539 acgtgagcccaaagcaaccattccttcattaactaaactgttcctttcaggtatttgtca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 acgtgagcccaaagcaaccattccttcattaactaaactgttcctttcaggtatttgtca 178
Query: 599 caagagaaaggcgaagcacgacccgggatttcttaaaattaaaggcttttactacacact 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 caagagaaaggcgaagcacgacccgggatttcttaaaattaaaggcttttactacacact 118
Query: 659 gttaa 663
|||||
Sbjct: 117 gttaa 113
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1065
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1055
Effective search space: 688915
Effective search space used: 688915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
