BAC Information

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BAC

Clone NameMSMg01-496N17
Chromosome17 (Build37)
Map Location 6,195,021 - 6,195,586
singlet/doubletsinglet
Overlap geneTulp4
Upstream geneArid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14, 3300005D01Rik, LOC100040342, LOC100040352, Snx9, LOC666951, Synj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184
Downstream geneEG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2, LOC100040654, Rshl2b, 1700122H20Rik, Tagap1, Rnaset2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496N17.T7 (MSMg01no496_n17.b1)MSMg01-496N17.TJ (MSMg01no496_n17.g1)
ACCAG573563AG573564
length785794
length of high quality
(start - end)		642 (47 - 688)565 (75 - 639)
definitionCHROMAT_FILE: MSMg01no496_n17.b1 PHD_FILE: MSMg01no496_n17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:20 2005CHROMAT_FILE: MSMg01no496_n17.g1 PHD_FILE: MSMg01no496_n17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCCATCTTCGTAAAAGCACAGCTCTCACTTCAGAGGAAACAAGA
GAGAGGTTCTTGTTTTTTGAACCTCTGGTCTCTTGTCATCAGCCGAAGAC
AGAGACATCCAAAGCCACCTGCCTGAGCCTGCAGAAGTGGGTACAGAAGA
TAGCCCAACCTTACTGGAGAGAAATGTGGATCAGTGCCAGGGGCCCTTAG
TGATGGGCTTGTGAAGAGACCAGAGCGATCTGAGAACCAGCGGCCAAGGA
TGCTAAAGGTGGTTTGGAACCACAGGGTTTGAGAATAAGGACCTGGAGTG
GCACCCTCTGGCTGCCAGTGTTGCCCAGAGTAGCTGAAAGAAGTGAGGAA
TTCCAGTCCTTTGTAAAACCCATAAACGTCTCACAATGGCCACCTGCTAT
GCCCCTTTAGCAGAGGAAGATGGTCTTGATTCCTCCTTGAGAGCATTCTG
TTTCTTTCTGCTCCTTCCCTCCCCTCTGCCCATTAGACTGATGTAGAATC
CTACTTGTTAGAACTCCAAACTTCTCAGTTTTTTCCTCTACGTTAAGTCA
TGACCTTGTAATGGACCAAATAGGTACCATCTCAGGATAGGCTAGTGGGA
ACAGACCGATGACAGAGAGTTCCTACCAACAGCTAGACATAAGGGCCTTC
TGTGCCCTTCACATCCAGGCTGCTGGCCTCTCTACCGTATGCTAGTCTTT
TCCGATTGCTAGCATCAACCGATGCCAGCAGGATG

NCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATGGTCTCCTTGCCTGTTTGGGAAAG
GAGTCTTCGCATATATGATTCGTTAAGGGCTTAAAACAAAGATGGGATTC
CCCTTTGTGGTGCAGCACTACTACAGAGTCATTGCTGGGTCTGGGGACGA
GGGAGGAGAAAGCTCACTTCTGGGCAGGAGAGGCTGTCTTACCTTGGCTC
TAGGTTAGTTTAGAAGTAAGTAGTCTTGAGTAGCAAAGGCATGGGGAGTC
TTCCGGTTCACACAGCTTATATGTGATGGCTACAGCCAGCTGTGAAGCTA
CATTGTATCTTTTCAGAATAAAACAGGAATCTTCTGTCAGGTGCAGGGTT
TTCTTTTACAGCTAGCTGTCTTACTTTAGAAACTTGTTTCTTTAGTTACA
AAATATCCAGGCCTGGTCTTGAAGCTCTTTTGAAGGCCACTGTTGTCAAA
TGAGAGAGAGAAGTTTGGTGTGAATTGCACATCAGAACAGAAGCTCCCTC
TGAAGAAAGAGAGGGATGTCTTTTCCTTCTGGTCCTCAGCAGGCCATTCA
GCTCTGCCACTCTCCATGCTAAAGCTTCCCCTGGCTCTGAGCCATAGAGC
TTATATAAAAAGCCATCACTTCCCTCANGAACTAACTAGTGCTAATAGTT
ATACTACATTACAAAAAGCTGTTTGTGGGAGCATGCTTGTTGATANGCAG
TTCCTCGGTTCAGCCTTACTAAAGCATGTAGATGAACATGTGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_n17.g1 MSMg01no496_n17.g1 CHROMAT_FILE:
MSMg01no496_n17.g1 PHD_FILE: MSMg01no496_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:20 2005
         (565 letters)



>mm_chr17_6194821_6195786
          Length = 966

 Score = 1071 bits (554), Expect = 0.0
 Identities = 563/566 (99%), Gaps = 1/566 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggtctccttgcctgtttgggaaaggagtcttcgcatatatgattcgttaagggcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggtctccttgcctgtttgggaaaggagtcttcgcatatatgattcgttaagggcttaa 260

                                                                       
Query: 61  aacaaagatgggattcccctttgtggtgcagcactactacagagtcattgctgggtctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaagatgggattcccctttgtggtgcagcactactacagagtcattgctgggtctgg 320

                                                                       
Query: 121 ggacgagggaggagaaagctcacttctgggcaggagaggctgtcttaccttggctctagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggacgagggaggagaaagctcacttctgggcaggagaggctgtcttaccttggctctagg 380

                                                                       
Query: 181 ttagtttagaagtaagtagtcttgagtagcaaaggcatggggagtcttccggttcacaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttagtttagaagtaagtagtcttgagtagcaaaggcatggggagtcttccggttcacaca 440

                                                                       
Query: 241 gcttatatgtgatggctacagccagctgtgaagctacattgtatcttttcagaataaa-a 299
           ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gcttagaagtgatggctacagccagctgtgaagctacattgtatcttttcagaataaaca 500

                                                                       
Query: 300 caggaatcttctgtcaggtgcagggttttcttttacagctagctgtcttactttagaaac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggaatcttctgtcaggtgcagggttttcttttacagctagctgtcttactttagaaac 560

                                                                       
Query: 360 ttgtttctttagttacaaaatatccaggcctggtcttgaagctcttttgaaggccactgt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtttctttagttacaaaatatccaggcctggtcttgaagctcttttgaaggccactgt 620

                                                                       
Query: 420 tgtcaaatgagagagagaagtttggtgtgaattgcacatcagaacagaagctccctctga 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtcaaatgagagagagaagtttggtgtgaattgcacatcagaacagaagctccctctga 680

                                                                       
Query: 480 agaaagagagggatgtcttttccttctggtcctcagcaggccattcagctctgccactct 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaagagagggatgtcttttccttctggtcctcagcaggccattcagctctgccactct 740

                                     
Query: 540 ccatgctaaagcttcccctggctctg 565
           ||||||||||||||||||||||||||
Sbjct: 741 ccatgctaaagcttcccctggctctg 766


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 966
Length adjustment: 10
Effective length of query: 555
Effective length of database: 956
Effective search space:   530580
Effective search space used:   530580
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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