BAC Information

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BAC

Clone NameMSMg01-496P22
Chromosome17 (Build37)
Map Location 28,319,904 - 28,416,688
singlet/doubletdoublet
Overlap geneZfp523, Def6, Ppard, 1810013A23Rik
Upstream geneLemd2, LOC100042713, ENSMUSG00000073430, Grm4, LOC677010, Hmga1, AI413582, Nudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764
Downstream geneFance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496P22.T7 (MSMg01no496_p22.b1)MSMg01-496P22.TJ (MSMg01no496_p22.g1)
ACCAG573668AG573669
length790756
length of high quality
(start - end)
248 (73 - 320)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no496_p22.b1 PHD_FILE: MSMg01no496_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:31 2005CHROMAT_FILE: MSMg01no496_p22.g1 PHD_FILE: MSMg01no496_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,319,904 - 28,320,148)(28,416,445 - 28,416,688)
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGACGATGCCGC
GGAATTCACTTTTTTCTTTGGTTTTATGTTTGATTTGGTTTGGGTTTTGG
GGTTTTTTTCGGAGTCAGAGTTTGCTCTGTGTAGCTCTGGCTGTCCTAGA
ATAAGCTTGTCACTTGTGAGACCCTTTTAGACAGCAAAATAGAACCATTG
ATAAGCAGCTCGATATATAGATCTGTGGGGCCCTCATACTGCCTGCTCTC
CCAGTGCCAGACTGCATGTAGAAGGAAAAGCTGGAGGGTTAGGAGTCTGC
CTGGACTCTGCCAGCAGTGATTTTTTTGATCCCACAGCTCCTGGCTTCCC
TTCTAAACGGCTACCTTAGGCTAGAAGGGAGCTGTCACCTCAGCCCCTCT
TGTGAGCATTGGCCACCCCACCACGANCAAGGCAGCAAGGCACCTCTGAG
GCTGTGATTCTGCCCAGGCAGTGTGTCGGTGATAGATTTCCTCCTTTCTT
CCTCCATTCGTACAGTAGTAACCAGGAGCACCCCCCACGTGTGGCCTGAG
GGAGACTGAGCCTGCCCTCCTGGAGCACGGCAGTCGGCTTCATACTACCA
GGCACAAGGGCCTCCACATGTGCACTGGTGTGCGCCAGGGTTTCAGCACT
GAGGAGCTGGTAACTTCCCGTGCCTCAAAGCTTGCTGCTAACTAGTCCAG
TTAACCATTTCTTTTTTTCAACATTTTCTCCCCAAATTTATGTCCCCATT
GTTCCTAGGAAAACCCTCCTGGGAACCTCCCACCCCTTGG
ACCGATGATAGGGGAGGCCTGGCGGCCGCCTGGTCACAAACTTGGGTGAA
CTATAGAAGGTCCCACAACAATCTCTGAAGAGGCACAAAGTCAAACAGAA
GGAGACTGACCGGGAAAGAGCACTGTTGTCTCTACTGAGACAGCCTGTGC
CTTCCTCACCTCCTGCCCCCACCACTCTCCAGCTTCCACTCCTTCCCTGC
CAACTGTGGAGGTGGGGGTGAGGGTTACAAGTGTCCCTGAGGCACAGGTT
GTCCGATGCCTCTAATGAGTGGCTTGGGACCAGCGTGGAGGGGCCCTAAG
AGAAAGTAGCTGGATGATGGTCTTCAGCTGCCCTATCAATCAGTAATCTG
TGTGCTGACCCAGTGACCCAATTTTCTGGGCCAGCAACTCTGCAGTACTC
GCTGCTTCCCATCCGCCAATCCAGGTCACCCCATGTCCTCAGGGTACCTG
AGGCCAGGGTAGATTCACCCTAGTGGGTACCTGAGGTCAATCTCCAAAAA
CCAGAAAGAGCAGGTACCAAACAGGACAAAACGGCCCTTGTATTTCTAGT
TAGTTCTCTGAGCGTCCAGAAGCAGCACTCAATGAAAATAAAAGCTCTGG
CAGCCAGAGAAAGAGAGCAGGAGCTCTTGCCTGAGCTGGGAAACAGGAAG
TGAGGTGCCTCAGGTGGGCTGCCAGCCCGGCTCTCAGCAGCCCTTGACTC
TGGGATGGGAGGGGTAATGTCCACCCCACCCCCAACATAGATAGATGGAG
AATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_p22.b1 MSMg01no496_p22.b1 CHROMAT_FILE:
MSMg01no496_p22.b1 PHD_FILE: MSMg01no496_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:31 2005
         (248 letters)



>mm_chr17_28319704_28320351
          Length = 648

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatgtttgatttggtttgggttttggggtttttttcggagtcagagtttgctctgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatgtttgatttggtttgggttttggggtttttttcggagtcagagtttgctctgtgt 260

                                                                       
Query: 61  agctctggctgtcctagaataagcttgtcacttgtgagacccttttagacagcaaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctctggctgtcctagaataagcttgtcacttgtgagacccttttagacagcaaaatag 320

                                                                       
Query: 121 aaccattgataagcagctcgatatatagatctgtggggccctcatactgcctgctctccc 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 aaccattgataagcagctcgatatatagatctgtggggccctcgtactgcctgctctccc 380

                                                                       
Query: 181 agtgccagactgcatgtagaaggaaaagctggagggttaggagtctgcctggactctgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtgccagactgcatgtagaaggaaaagctggagggttaggagtctgcctggactctgcc 440

                
Query: 241 agcag 245
           |||||
Sbjct: 441 agcag 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no496_p22.g1 MSMg01no496_p22.g1 CHROMAT_FILE:
MSMg01no496_p22.g1 PHD_FILE: MSMg01no496_p22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:31 2005
         (244 letters)



>mm_chr17_28416245_28416888
          Length = 644

 Score =  456 bits (236), Expect = e-133
 Identities = 242/244 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctctgaagaggcacaaagtcaaacagaaggagactgaccgggaaagagcactgttgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tctctgaagaggcacaaagtcaaacagaaggagactgaccgggaaagagcactgttgtct 385

                                                                       
Query: 61  ctactgagacagcctgtgccttcctcacctcctgcccccaccactctccagcttccactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctactgagacagcctgtgccttcctcacctcctgcccccaccactctccagcttccactc 325

                                                                       
Query: 121 cttccctgccaactgtggaggtgggggtgagggttacaagtgtccctgaggcacaggttg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cttccctgccgactgtggaggtgggggtgagggttacaagtgtccctgaggcacaggttg 265

                                                                       
Query: 181 tccgatgcctctaatgagtggcttgggaccagcgtggaggggccctaagagaaagtagct 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcccatgcctctaatgagtggcttgggaccagcgtggaggggccctaagagaaagtagct 205

               
Query: 241 ggat 244
           ||||
Sbjct: 204 ggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)