BAC Information

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BAC

Clone NameMSMg01-497I14
Chromosome17 (Build37)
Map Location 55,667,002 - 55,667,671
singlet/doubletsinglet
Overlap genenone
Upstream geneEG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
Downstream geneLOC383258, Pot1b, Emr4, Zfp119, BC011426, EG433125, BC031441, Ebi3, Ccdc94, Shd, Fsd1, AW049765, Mpnd, Sh3gl1, Chaf1a, Ubxd1, Hdgfrp2, S3-12, 2310076L09Rik, Lrg1, Sema6b, Tnfaip8l1, D17Wsu104e, Dpp9, LOC668573, A230051N06Rik, Fem1a, Ticam1, M6prbp1, Arrdc5, Uhrf1, Jmjd2b, Ptprs, EG668592, Znrf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497I14.T7 (MSMg01no497_i14.b1)MSMg01-497I14.TJ (MSMg01no497_i14.g1)
ACCAG574081AG574082
length746765
length of high quality
(start - end)		670 (74 - 743)307 (81 - 387)
definitionCHROMAT_FILE: MSMg01no497_i14.b1 PHD_FILE: MSMg01no497_i14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:16 2005CHROMAT_FILE: MSMg01no497_i14.g1 PHD_FILE: MSMg01no497_i14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGGACTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCCCAACAATTTCTGTATCATTTTTTTCCTATACATATACAA
ACAAAATGCATTGTCCACCTGCACTAATCACTAGGCAAATACGATGAATT
TAACTTTTACACAGAAATAAAAATACCATGAATTTCTTTTTACTCATAGT
TTTACATGAAGCAAATTCATTTTCTTGTAGATCTCAGCAACTTCAGCACT
TCACCTTTTTCCTTTCCATAGTTTATCTAGTTGTAAGAAAGATATTATCA
TTTCTTCATATAAACAACTTGGCAATAGCTGCCTATTATCCGAATGCTGT
GGCACCATCTACACATATAGCATGCAGTTGTTAGGAGCTGGTTTAATACA
TCTATTTTTTAGAATAGTAGTAGTAGAAGATATGACTTGTCCATTCACAA
CTTCTGTAGTGTCTTTCTGCCCCATGGCATTTCACTCTGTTCCATGTCAG
GAATGTAAGGCTTTTTCTAAAATAAATACATCTCTACCTCATGATAAAGG
CAGGTCTCCCATACCTAGGTGAAACAACTGTGGATGGAAAGTATAAGACT
TGTTCTGATGTTGCCTCAGAGATGGATCACTTTACTTAACTGAAAAGACT
TCATAGATTGATCATCATTGCTCTAAGTAATTTTTACCATTTTTGATATA
AAAATTTGAGTTTGGGTGTTTTAAAATTTTAAAACATTCATATATN

NNNTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAGAA
GTGGATGCTCATAGTCAGCTATTGGATGAAGCACAAGACCCCCAATGGAG
GAGGTAGAGAAAGTACTCAAGGAACTAAAGGGGTCTGCAACCCTATAGGA
GGAACAACAATATGAACTAACCATTACCCCCAGAGCTTGTGTCTAGCTGC
ATATGTAGCAGAAGATGCCTAGTCGGTCATCATTGGGAAGAGAGGCCCCT
TGGTATTGCAAACTTTATATGCCCCAGTACTGGTGAAGGCCAGCTCCAAG
AAGTGGGAGTGGGTGGGTAGGGNGAGTGTTGGGTGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTNNTTTNNTTNTNTTNTNNTTTTTTTNNTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTT
TTTTTNTTTTNNTNT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_i14.b1 MSMg01no497_i14.b1 CHROMAT_FILE:
MSMg01no497_i14.b1 PHD_FILE: MSMg01no497_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:16 2005
         (670 letters)



>mm_chr17_55666802_55667871
          Length = 1070

 Score = 1295 bits (670), Expect = 0.0
 Identities = 670/670 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatcatttttttcctatacatatacaaacaaaatgcattgtccacctgcactaatcacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatcatttttttcctatacatatacaaacaaaatgcattgtccacctgcactaatcacta 260

                                                                       
Query: 61  ggcaaatacgatgaatttaacttttacacagaaataaaaataccatgaatttctttttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaaatacgatgaatttaacttttacacagaaataaaaataccatgaatttctttttac 320

                                                                       
Query: 121 tcatagttttacatgaagcaaattcattttcttgtagatctcagcaacttcagcacttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatagttttacatgaagcaaattcattttcttgtagatctcagcaacttcagcacttca 380

                                                                       
Query: 181 cctttttcctttccatagtttatctagttgtaagaaagatattatcatttcttcatataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctttttcctttccatagtttatctagttgtaagaaagatattatcatttcttcatataa 440

                                                                       
Query: 241 acaacttggcaatagctgcctattatccgaatgctgtggcaccatctacacatatagcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaacttggcaatagctgcctattatccgaatgctgtggcaccatctacacatatagcat 500

                                                                       
Query: 301 gcagttgttaggagctggtttaatacatctattttttagaatagtagtagtagaagatat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagttgttaggagctggtttaatacatctattttttagaatagtagtagtagaagatat 560

                                                                       
Query: 361 gacttgtccattcacaacttctgtagtgtctttctgccccatggcatttcactctgttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttgtccattcacaacttctgtagtgtctttctgccccatggcatttcactctgttcc 620

                                                                       
Query: 421 atgtcaggaatgtaaggctttttctaaaataaatacatctctacctcatgataaaggcag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtcaggaatgtaaggctttttctaaaataaatacatctctacctcatgataaaggcag 680

                                                                       
Query: 481 gtctcccatacctaggtgaaacaactgtggatggaaagtataagacttgttctgatgttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtctcccatacctaggtgaaacaactgtggatggaaagtataagacttgttctgatgttg 740

                                                                       
Query: 541 cctcagagatggatcactttacttaactgaaaagacttcatagattgatcatcattgctc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctcagagatggatcactttacttaactgaaaagacttcatagattgatcatcattgctc 800

                                                                       
Query: 601 taagtaatttttaccatttttgatataaaaatttgagtttgggtgttttaaaattttaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 taagtaatttttaccatttttgatataaaaatttgagtttgggtgttttaaaattttaaa 860

                     
Query: 661 acattcatat 670
           ||||||||||
Sbjct: 861 acattcatat 870


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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