Query= MSMg01no497_l21.b1 MSMg01no497_l21.b1 CHROMAT_FILE:
MSMg01no497_l21.b1 PHD_FILE: MSMg01no497_l21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:32 2005
(554 letters)
>mm_chr17_42934679_42935633
Length = 955
Score = 949 bits (491), Expect = 0.0
Identities = 536/551 (97%), Gaps = 1/551 (0%)
Strand = Plus / Plus
Query: 5 ggaattcctcttcattcca-tggcgcttccagaacaccatggccatggccattgaagtac 63
|||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcctcttcaagcaaatggcgcttccagaacaccatggccatggccattgaagtac 264
Query: 64 actcccctcgaaaggttcaaatagcctttgtttccccagttctctgaagctattccaggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 actcccctcgaaaggttcaaatagcctttgtttccccagttctctgaagctattccaggg 324
Query: 124 tgtgtgctttttgccagtgcactcacttccaaacaagatggtgcctgcacccacctgcaa 183
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 tgtgtgctttttgccagtgcactcacttccaaacaagacggtgcctgcacccacctgcag 384
Query: 184 ctggctaagattccctccctccagtccaggccagaccgaatgggcctgactaccccaaga 243
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 385 ctggctaagattccctccctccagtccaggccaggccgaatgggcctgactaccccaaga 444
Query: 244 gagaagctgaccaggacgcaggaaggcaaaagcctgcttgccccttaaggtaaaaaagaa 303
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 445 gaggagctgaccaggacgcaggaaggcaaaagcctgtttgccccttaaggtaaaaaagaa 504
Query: 304 aaaaagaaacacaaggctcagagaactgaagatcaagggataacacttgtttactcactc 363
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 aaaaagaaacacaaggctcagagaactgaagatcaagggataccacttgtttactcactc 564
Query: 364 agacccttacaaatctagtgcttcacacgctgtaaagactcgggcctgtcacggagctgg 423
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 565 agacccttacaaatctagtgcttcacatgctgtaaagactcgggcctgtcacggagctgg 624
Query: 424 agctgcagctccaggtctgaatgactccctaggaagcacaaggccccgtgtgtgattcgc 483
| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 aactgcagctccacgtctgaatgactccctaggaagcacaaggccccatgtgtgattcgc 684
Query: 484 aaaacagcatgaacccacaaagtcaacaactgcatacagaatcaacagaaacttaggcaa 543
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 685 aaaacagcatgaacccacaaagtcaacaactgcatacagaatcaacagaaatttaggcaa 744
Query: 544 ctattaccata 554
|||||||||||
Sbjct: 745 ctattaccata 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 955
Length adjustment: 10
Effective length of query: 544
Effective length of database: 945
Effective search space: 514080
Effective search space used: 514080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_l21.g1 MSMg01no497_l21.g1 CHROMAT_FILE:
MSMg01no497_l21.g1 PHD_FILE: MSMg01no497_l21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:32 2005
(522 letters)
>mm_chr17_43110976_43111899
Length = 924
Score = 803 bits (415), Expect = 0.0
Identities = 463/485 (95%), Gaps = 11/485 (2%)
Strand = Plus / Minus
Query: 1 tctccactaccatgcacctgtttatactgatggaatgcagaacgcctagcccctttagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tctccactaccatgcacctgtttatactgatggaatgcagaacgcctagcccctttagct 426
Query: 61 cttcctacataccactggaaaatgggtctgaggttaccagagtggtactcaaccttaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 gttcctacataccactggaaaatgggtctgaggttaccagagtggtactcaaccttaaag 366
Query: 121 ggtagtgtagaattaaggtaaggccttgaggcacctgtgtgattccgtgacagga--ggg 178
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 365 ggtagtgtagaattaaggtagggccttgaggcacctgtgtgattccgtgacaggaggggg 306
Query: 179 aaagggcaaaaggatgaaatgctaaacaacaagaaagagcatgcaaagcaggcgcctctg 238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aaagggcagaaggatgaaatgctaaacaacaagaaagagcatgcaaagcaggcgcctctg 246
Query: 239 gagggtgttcttttagaattgagcaatagtagtcactgggactaactagggagatggcgc 298
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gagggcgttcttttagaattgagcaatagtagtcactgggactaactagggagatggcgc 186
Query: 299 tgaagttaagagcacatactgctcttgcgtaggttttaatgccagcacctacaatttatc 358
|| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 185 tgcagttaagagcacatactgctcttgcgtaggtcttaacgccagcacctacaatttatc 126
Query: 359 aatgggatggcttaccaatgtaactccagctccaggggatccaatactcacttctggcct 418
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 aatgggatggcttacaaacgtaactccagctccaggggatccaatactcacttctggcct 66
Query: 419 ccaaaggcatttaca---------caacatacccccacatagggctggagagattactca 469
||||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct: 65 ccaaaggcatttacactcagatatcaacatacccccacatagggctggagacatgactca 6
Query: 470 gtggt 474
|||||
Sbjct: 5 gtggt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space: 467968
Effective search space used: 467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
