BAC Information

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BAC

Clone NameMSMg01-498C05
Chromosome17 (Build37)
Map Location 35,200,957 - 35,354,623
singlet/doubletdoublet
Overlap geneAU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta
Upstream geneCol11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2
Downstream geneNfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498C05.T7 (MSMg01no498_c05.b1)MSMg01-498C05.TJ (MSMg01no498_c05.g1)
ACCAG574536AG574537
length770762
length of high quality
(start - end)
504 (53 - 556)550 (85 - 634)
definitionCHROMAT_FILE: MSMg01no498_c05.b1 PHD_FILE: MSMg01no498_c05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:03 2005CHROMAT_FILE: MSMg01no498_c05.g1 PHD_FILE: MSMg01no498_c05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,354,147 - 35,354,623)(35,200,957 - 35,201,506)
sequence
NCCCTGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCTTCAATTCTCCTGTCTGGCGCTAGGTCATAAACTCCA
CAGAGGCCTCGGGAGAAAGGTCTTGCCAATGGATGGGCTTAGCTGAGTTC
CCTGACTCTGTATCTATTAGGGGACAACCTCTGTCCAGTCACTTTTCTGC
ACAGCTGTTCCGGAGGCGTCAAATCTAAACCTAAAACCTGACGCCCAGCC
GGGTTTGACACAAAGACTCCTGTTGCAAAAAAAAAAAAAATGGTTTCCGT
ATGCTTTTGTTTTGTTAACTTGTCTTTTTTTCTTTTTTAAGATTTATTTT
TTATTTATATGAGCACACTGTTGTTGTCTTCAGACACAACAGAAGAGTAC
ATCAGATCCCATTACAGATGGTTGTGAGCCATCATGTGGTTGCTGAGATT
TGAACTCAGGACCTCTGACAGAGCATAGTGCTCTTAACCACTAAGCCATC
TTTCCAGCCCACTAACTTGTCTTCGTAACAGTATGAGCTACACATCTTTT
TTTTGGGTGGGGGGGTGTTTTCCCTTTTTTTTTCCCCATTTAGTTCACAT
TCTCCTTCTTTTTATTCTATTTTTGTATTCATTTATCTTTCTTTGTTAAT
TTTCTCCATTTATCCTTTTTCTTTTATCTTTTTTTACTTTCCCTCTATTT
TATCTCCGTTTACTCTCTTCATCTCTTCTTCATGGTATATTTTGTATCTT
CCTTCTTTCTCACTTTTATG
TTTTTCCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAGTTCAAGGCCA
GCTTGGTCTATGGTCTACGGAGTTCCAAGACAGCCAAGGCTATACAGAGA
AATCCCAGTCTTGGGGGGGGGCGCGAAGAAAAAGCTTAACAGGCAGCTTG
ATCATCTTTAGAGAGGGCAGCAGTGGAGAAGGAAAGATGTTACAGAAGAT
GGAAGTGACAGAAAAAAAGTTGACCATTGGCAGAACGCAAACCAGGTAGT
CAGTCGCCTCTATCAGTGCCTCTGTCCATGGTGCCTGCCCCTTCTAGCTG
AGGTTATACAGGGGAGCCCCAGATAGAAAGGGTTGGCAGAACAAGGGCTT
CCCTTTATACTACAACCGCATAGACAGTGGAGGCATCACCAGAAACCACT
GTGGACATCCGGCGGTGCCTCCCGAGGACAGAGTGGTCCAGATCAGCGTA
GTGCAGGCTCTGGAGGAGGTAGAGAGAGGACGGTAGTATGGTCTCATCAA
TCTGACCCCTTAGCTTGGAATCAAAGCTTTTTTTCTTTTCCCCACTGTGG
GTAAAGGCGACTATGTAGCAAAGCCTGGCTTTCATCTTCCTGCTTAAACC
TCCAGAGTGCTGGGATTACACTGCTGCTCCACAGCAACCTAGTTTGGCTG
CCTTCTTGGGCTTCTTTCCTTCGGGTATCTGGTTTTTTTCCCCTCCTCAA
GCCTTTTCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_c05.b1 MSMg01no498_c05.b1 CHROMAT_FILE:
MSMg01no498_c05.b1 PHD_FILE: MSMg01no498_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:03 2005
         (504 letters)



>mm_chr17_35354147_35355055
          Length = 909

 Score =  853 bits (441), Expect = 0.0
 Identities = 466/477 (97%), Gaps = 5/477 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttcaattctcctgtctggcgctaggtcataaactccacagaggcctcgggaga 64
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 gaattccttcaatcctgttgtctggcgctaggtcataaactccacagaggcctcgggaga 418

                                                                       
Query: 65  aaggtcttgccaatggatgggcttagctgagttccctgactctgtatctattaggggaca 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaggtcttgccaatggatgggcctagctgagttccctgactctgtatctattaggggaca 358

                                                                       
Query: 125 acctctgtccagtcacttttctgcacagctgttccggaggcgtcaaatctaaacctaaaa 184
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 357 acctctgtccagtcacttttcttcacagctgttccgggggcgtcaaatctaaacctaaaa 298

                                                                       
Query: 185 cctgacgcccagccgggtttgacacaaagactcctgttgc-----aaaaaaaaaaaaaat 239
           ||||||||||||||||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 297 cctgacgcccagccgggtttgacacaaagactcctgttgcaaaaaaaaaaaaaaaaaaat 238

                                                                       
Query: 240 ggtttccgtatgcttttgttttgttaacttgtctttttttcttttttaagatttattttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggtttccgtatgcttttgttttgttaacttgtctttttttcttttttaagatttattttt 178

                                                                       
Query: 300 tatttatatgagcacactgttgttgtcttcagacacaacagaagagtacatcagatccca 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tatttatatgagcacactgttgttgtcttcagacacaacagaagagtacatcagatccca 118

                                                                       
Query: 360 ttacagatggttgtgagccatcatgtggttgctgagatttgaactcaggacctctgacag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 ttacagatggttgtgagccatcatgtggttgctgagatttgaactcaggacctctgacag 58

                                                                    
Query: 420 agcatagtgctcttaaccactaagccatctttccagcccactaacttgtcttcgtaa 476
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  agcatagtgctcttaaccactaagccatctttccagcccactaacttgtcttcgtaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 909
Length adjustment: 10
Effective length of query: 494
Effective length of database: 899
Effective search space:   444106
Effective search space used:   444106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no498_c05.g1 MSMg01no498_c05.g1 CHROMAT_FILE:
MSMg01no498_c05.g1 PHD_FILE: MSMg01no498_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:03 2005
         (550 letters)



>mm_chr17_35200757_35201706
          Length = 950

 Score = 1064 bits (550), Expect = 0.0
 Identities = 550/550 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagttcaaggccagcttggtctatggtctacggagttccaagacagccaaggctata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagttcaaggccagcttggtctatggtctacggagttccaagacagccaaggctata 260

                                                                       
Query: 61  cagagaaatcccagtcttgggggggggcgcgaagaaaaagcttaacaggcagcttgatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagagaaatcccagtcttgggggggggcgcgaagaaaaagcttaacaggcagcttgatca 320

                                                                       
Query: 121 tctttagagagggcagcagtggagaaggaaagatgttacagaagatggaagtgacagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctttagagagggcagcagtggagaaggaaagatgttacagaagatggaagtgacagaaa 380

                                                                       
Query: 181 aaaagttgaccattggcagaacgcaaaccaggtagtcagtcgcctctatcagtgcctctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaagttgaccattggcagaacgcaaaccaggtagtcagtcgcctctatcagtgcctctg 440

                                                                       
Query: 241 tccatggtgcctgccccttctagctgaggttatacaggggagccccagatagaaagggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatggtgcctgccccttctagctgaggttatacaggggagccccagatagaaagggtt 500

                                                                       
Query: 301 ggcagaacaagggcttccctttatactacaaccgcatagacagtggaggcatcaccagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcagaacaagggcttccctttatactacaaccgcatagacagtggaggcatcaccagaa 560

                                                                       
Query: 361 accactgtggacatccggcggtgcctcccgaggacagagtggtccagatcagcgtagtgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accactgtggacatccggcggtgcctcccgaggacagagtggtccagatcagcgtagtgc 620

                                                                       
Query: 421 aggctctggaggaggtagagagaggacggtagtatggtctcatcaatctgaccccttagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggctctggaggaggtagagagaggacggtagtatggtctcatcaatctgaccccttagc 680

                                                                       
Query: 481 ttggaatcaaagctttttttcttttccccactgtgggtaaaggcgactatgtagcaaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggaatcaaagctttttttcttttccccactgtgggtaaaggcgactatgtagcaaagc 740

                     
Query: 541 ctggctttca 550
           ||||||||||
Sbjct: 741 ctggctttca 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)