BAC Information

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BAC

Clone NameMSMg01-498C20
Chromosome17 (Build37)
Map Location 26,531,565 - 26,532,023
singlet/doubletsinglet
Overlap genenone
Upstream geneCacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3, Decr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2, Arhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229
Downstream geneEG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2, LOC100042713, ENSMUSG00000073430
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498C20.T7 (MSMg01no498_c20.b1)MSMg01-498C20.TJ (MSMg01no498_c20.g1)
ACCAG574566AG574567
length773761
length of high quality
(start - end)		555 (46 - 600)480 (57 - 536)
definitionCHROMAT_FILE: MSMg01no498_c20.b1 PHD_FILE: MSMg01no498_c20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:06 2005CHROMAT_FILE: MSMg01no498_c20.g1 PHD_FILE: MSMg01no498_c20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTGCCATGGCCCCTCAGCATGGGGGCAGGGGCTAGCCAGGAGT
AAGGGCTGGGTGCAGATCCAACTTCTAGGCCACTGCTGCAATGAGAACTT
GGCTCGCTGCCCTTGAGAGTGGGAGGCAGAGTCTCTCAGAGCACCACAGC
AGACAGATGTGAGTGACATCTTCTCAGATGTCCCTAGCTCTGCAGACATC
CACAAACATGGACTCATCTTTGTAGAGCTCAAAGTTTTTAAAAACAGATT
TATTAGCCGGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTAGGAGG
CAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCTTGGTCTACATCGTGA
GTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAGAGAAGAAA
AAAAAAAAACAATACAAAACCAAAAAACCAAAAACAAAAATAGATTTAAG
ACATGCAACTTGCGTGTTATAAATCCACCCATTCAAAGTGCACAGTTCGT
GACTGTCAGTCTCATTAGTTTTGTAACTGTCACTGTTTTCAGTCTTAGAA
CCTCAGAATGAAAACTGAATTTCAGCTGGAGACCCACATTCTCTCTCTCA
CCATTGCCTCTGCTTGTAGGNTGCTCTCTGCCTGCCCCTTCTCCGCAGAC
TCTCATTAGGAACCCCCCTGGCCACTGGGAACAGATTTCCTTGACAGAAC
GCTCTCTGGGACTTGCCCTGCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXAAAGACCACCCCAAGTGACACACTTCTTCCAACAAGACCACACC
TTCTAATAGTGCCACTCCCTATGAGTTTATGTGGGGTTGAGGGGCCATTT
TCCTTCAGACCACCACGCCTCTGAATGCTATGTCCCAACCTGGGAAAGAA
AGGTTTCATGAATCTTTAATTATAATTTTTCCTTTTGAGAAAGGGTCTCT
GTGTTCTGGCTGTCCTAGAACTCACTCTGTATAACAGGCTGACCTTGAAT
TCAGGAATCTGCCTGCATCCTGAGTGCTGGGGTTAAAGGTGTATGACACT
ATGTGTACTGGCTAGTTTTGTGTCAACTTGATGCAGCTGGAGTTATCGCA
GAGGAAAGAACTTCAGTTGAGGAAATGCCTCCATGAGATCCAATTGTAAG
GCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTGGGAC
CACCTCTGGGCTGGCAGTCTTGGTTCTATAAGCTGAGCAAGCCACGGAAG
GCAAGCCAGTAAAGAAGATCCCTCCATGGNCTCTGCATCAGCTGCTGCTT
TCTGACCTGCTTGAGTTTCAGTCCTGACTTCCTTTGGTGATGAACAGCAG
TATGGAAATGTTAGCTGGATAAACCCTTTCTCCCCCATTTGCTTCTTGTC
ATGAGGTTGTGCCGGAATAAAAACCCGACTAAAATGAAGCATTTTGTTGA
AGGGGGGAGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_c20.b1 MSMg01no498_c20.b1 CHROMAT_FILE:
MSMg01no498_c20.b1 PHD_FILE: MSMg01no498_c20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:06 2005
         (555 letters)



>mm_chr17_26531565_26532519
          Length = 955

 Score =  859 bits (444), Expect = 0.0
 Identities = 456/460 (99%), Gaps = 1/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtgccatggcccctcagcatgggggcaggggctagccaggagtaagggctgg 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 459 gaattcctgtgccatggcccctcagcatgggggcgggggctagccaggagtaagggctgg 400

                                                                       
Query: 65  gtgcagatccaacttctaggccactgctgcaatgagaacttggctcgctgcccttgagag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gtgcagatccaacttctaggccactgctgcaatgagaacttggctcgctgcccttgagag 340

                                                                       
Query: 125 tgggaggcagagtctctcagagcaccacagcagacagatgtgagtgacatcttctcagat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgggaggcagagtctctcagagcaccacagcagacagatgtgagtgacatcttctcagat 280

                                                                       
Query: 185 gtccctagctctgcagacatccacaaacatggactcatctttgtagagctcaaagttttt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 279 gtccctagctctgcagacatccacaaacatggactcatctttgtagagctcaaatttttt 220

                                                                       
Query: 245 aaaaacagatttattagccgggcagtggtggcgcatgcctttaatcccagcacttaggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 aaaaacagatttattagccgggcagtggtggcgcatgcctttaatcccagcacttaggag 160

                                                                       
Query: 305 gcagaggcaggcagatttctgagttcgaggccagcttggtctacatcgtgagttccagga 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 gcagaggcaggcggatttctgagttcgaggccagcttggtctacatcgtgagttccagga 100

                                                                       
Query: 365 cagccagggctatacagagaaaccctgtctcagagaagaaaaaaaaaaaacaatacaaaa 424
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 99  cagccagggctatacagagaaaccctgtctcagagaag-aaaaaaaaaaacaatacaaaa 41

                                                   
Query: 425 ccaaaaaaccaaaaacaaaaatagatttaagacatgcaac 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  ccaaaaaaccaaaaacaaaaatagatttaagacatgcaac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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