BAC Information

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BAC

Clone NameMSMg01-498K05
Chromosome17 (Build37)
Map Location 35,064,125 - 35,064,626
singlet/doubletsinglet
Overlap geneSlc44a4
Upstream geneTapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa, Brd2, LOC100043003, LOC100043522, H2-DMa, H2-DMb2, H2-DMb1, Psmb9, Tap1, Psmb8, Tap2, H2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2
Downstream geneNeu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-498K05.T7 (MSMg01no498_k05.b1)MSMg01-498K05.TJ (MSMg01no498_k05.g1)
ACCAG574913AG574914
length754749
length of high quality
(start - end)
610 (82 - 691)496 (81 - 576)
definitionCHROMAT_FILE: MSMg01no498_k05.b1 PHD_FILE: MSMg01no498_k05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:45 2005CHROMAT_FILE: MSMg01no498_k05.g1 PHD_FILE: MSMg01no498_k05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:24:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAGA
TGCGCGGAATTCAGTAAGATTTCACCTATTCAGTAACATTCAAATTCTCT
TCTAGTATAGACAGTGAAAGTAATTAGGCATTATAATTTACTCGAACAAA
GCTAGAAAAGCTCATGGCTAGTCTGCATAGTAATTACTTAGGACAATAGC
CGAGTCACACCCAAACACAGGAATACACAATGACCTAGGAAATAGGTGGG
TTGTCCCATGAAAGGGTTAGTAGAAGGGAATTCCCCTGGTGCAGATTTTT
TCACTAGACCCAGAGGAATAGCAAAATCAGGTATTTAATAAAGAACCCCT
GGTGGTGGGTTTAATAATAGATTAGCATTGCATCAGAGGATTCACCTGGC
TCCTGTGTTTAGCTGATCTTTTTAATTAAGGGTTGTTCCTATTTTCAATG
GTAAACGCGGCCTGGATCCTGCCATCTTTTTATGTATGCATTCTTTTTGT
TTTGTGTCAATGTAACTTGGCAGATGTGTTCACCTGGCTTTCTTGGTTTT
CTTCTGTATTAAAAGTACAGTGTTCCTTTGGACAAATTACATTCAGATTT
AGCACTCCCTTGTGTCTGCAACTATTTGTCAGTTCTCACTGACTCTTTGC
CCATCTGTCTGAAACCCTGATTCCACACAGATTGAGAGAGGCCGACTGGG
CCAAACAGGGACTTCATGGCAGGGTAGACTTTATCTTTTTTCTTTTCCTT
TTCT
TTTTCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACGGGGCCTGGGGGTGACA
GGACATAGCAGGTTCATGCCCGGAGTTGCAGGCAAATCCTTGACCTTCTC
TGTTCCTAGTGGCCTCCAGACTCAGACCACCTCAGTGCTGCTGTAGTGTG
ACTAAGCAGCTTCCTGGTTTCCAGACTGGCACAAGCTATCCAGAAGGCAA
GCGAGGTGCGTGCGTGGATGTTTTCCACCCCCTCTCCCTCTTACTTTCCC
AGCAGCCTGCTTCTGGAGAAGCCTTGTGTGCTCTGAACACACTGTGGGTA
TTTATTGATATTAAACTGACTTTGTGGGCTCTAACAATGACACAGTTATA
GCATGCATGTGTGTGTGTCTGTGTGCATGTGTCTGTGATGTGTGTGTGCA
CACGCATGTGATGCATGCATGTGTAAGTGTATGCATGTGTGTATCTGTAT
GTATGTGCTTGTCTGTATGTGTGTACATGTCTGTGGAATGTGTGTGTGCA
GTGCATGTATGTGTGTGTGTGTATGTGCGTGTGGTACATGTATGCGTGCG
GTAATTGATTTTTTATTTTTTTTTTTTTTTTCTTCCGCGAAACCTCTTTT
ATTTTTTTCCCTTTTTTTTTTCTCCTTTTTTTTTTTTACTGTTTCACTTT
TTCTTCTTTTTCTTTTTTTTTTTTTAAATCCTTATTATAATTTATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no498_k05.g1 MSMg01no498_k05.g1 CHROMAT_FILE:
MSMg01no498_k05.g1 PHD_FILE: MSMg01no498_k05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:24:46 2005
         (496 letters)



>mm_chr17_35064100_35064995
          Length = 896

 Score =  928 bits (480), Expect = 0.0
 Identities = 494/502 (98%), Gaps = 6/502 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacggggcctgggggtgacaggacatagcaggttcatgcccggagttgcaggcaaatcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aacggggcctgggggtgacaggacatagcaggttcatgcccggagttgcaggcaaatcct 468

                                                                       
Query: 61  tgaccttctctgttcctagtggcctccagactcagaccacctcagtgctgctgtagtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgaccttctctgttcctagtggcctccagactcagaccacctcagtgctgctgtagtgtg 408

                                                                       
Query: 121 actaagcagcttcctggtttccagactggcacaagctatccagaaggcaagcgaggtgcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 actaagcagcttcctggtttccagactggcacaagctatccagaaggcaagcgaggtgcg 348

                                                                       
Query: 181 tgcgtggatgttttccaccccctctccctcttactttcccagcagcctgcttctggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 347 tgcgtggatgttttccaccccctctccctcttactttcccagcagcctgcttctggaaaa 288

                                                                       
Query: 241 gccttgtgtgctctgaacacactgtgggtatttattgatattaaactgactttgtgggct 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gccttgtgtgcactgaacacactgtgggtatttattgatattaaactgactttgtgggct 228

                                                                       
Query: 301 ctaacaatgacacagttatagcatgcatgtgtgtgtgtctgtgtgcatgtgtctgtgatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctaacaatgacacagttatagcatgcatgtgtgtgtgtctgtgtgcatgtgtctgtgatg 168

                                                                       
Query: 361 tgtgtgtgcacacgcatgtgatgcatgcatgtgtaagtgtatgcatgtgtgtatctgtat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 tgtgtgtgcacacgcatgtgatgcatgcatgtgtaagtgtatgcatgtgtgtatctgtat 108

                                                                       
Query: 421 gtatgtgcttgtctgtatgtgtgtacatgtctgtggaa------tgtgtgtgtgcagtgc 474
           ||||||||||||||||||||||||||||||||||||||      ||||||||||||||||
Sbjct: 107 gtatgtgcttgtctgtatgtgtgtacatgtctgtggaatgtgtgtgtgtgtgtgcagtgc 48

                                 
Query: 475 atgtatgtgtgtgtgtgtatgt 496
           ||||||||||||||||||||||
Sbjct: 47  atgtatgtgtgtgtgtgtatgt 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)