Query= MSMg01no499_c08.b1 MSMg01no499_c08.b1 CHROMAT_FILE:
MSMg01no499_c08.b1 PHD_FILE: MSMg01no499_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:28 2005
(523 letters)
>mm_chr17_31444520_31445443
Length = 924
Score = 855 bits (442), Expect = 0.0
Identities = 494/524 (94%), Gaps = 22/524 (4%)
Strand = Plus / Plus
Query: 3 gaattcccaaacttaatt---cctacttatgttgtctgggtttcctttcctggtcgatcc 59
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 203 gaattcccaaacttaattaaa--tacttatgttgtctgggtttcctttcctggtggatcc 260
Query: 60 agtcttaaatgcttctccaagtggctcctactctagatgcggtttgacccctctccctgc 119
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 agtcttaaatgcttctccaagtggctcctactctagatgcggtttgacctctctccctgc 320
Query: 120 tctggagcagcctctgtagtgcagacactgggtgtacccttgagagcaggtgacggttag 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tctggagcagcctctgtagtgcagacactgggtgtacccttgagagcaggtgacagttag 380
Query: 180 ggaacaggtgtcccaatagccatcaagtctttgtatttacatcagaacagggacggaagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaacaggtgtcccaatagccatcaagtctttgtatttacatcagaacagggacggaagt 440
Query: 240 gggtgtgttttctcaccccacttgatttgtgggttgactactggagcgaatggcttctga 299
||||| ||||||||||||||||||| |||| |||||||||||||
Sbjct: 441 gggtg-----------------tgatttgtgggttgactacaggagtgaatggcttctga 483
Query: 300 ctattgtagaagaaccaaggatgctgtctggtgccaagatcaacctctttacagctctgt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctattgtagaagaaccaaggatgctgtctggtgccaagatcaacctctttacagctctgt 543
Query: 360 cccctgcttgccttccaacagtcggcagggacctggcccaggactctggagttatgacct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cccctgcttgccttccaacagtcggcagggacctggcccaggactctggagttatgacct 603
Query: 420 tcccagttgagctgggctagctgccccggaaaggcttctggcactggagacagtataaag 479
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 604 taccagttgagctgggctagctgcccccgaaaggcttctggcactggagacagtataaag 663
Query: 480 gatgactgcctctggggtcctgggtgccttctccagagtttttc 523
|||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 664 gatgactgcctctggggttctgggtgccttctccagagtttttc 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 924
Length adjustment: 10
Effective length of query: 513
Effective length of database: 914
Effective search space: 468882
Effective search space used: 468882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_c08.g1 MSMg01no499_c08.g1 CHROMAT_FILE:
MSMg01no499_c08.g1 PHD_FILE: MSMg01no499_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:28 2005
(309 letters)
>mm_chr17_31432547_31433255
Length = 709
Score = 574 bits (297), Expect = e-168
Identities = 306/309 (99%)
Strand = Plus / Minus
Query: 1 ctgccgtcgacttcctggagcggccgccctttcactttcccggccctgtgaacgccgacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgccgtcgacttcctggagcggccgccctttcactttcccggccctgtgaacgccgacc 565
Query: 61 cagagcggctcctccctctcccgcgcgccccctgaccccggccccgcgcgcgcccaaggg 120
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctgtgcggctcctccctctcccgcgcgccccctgaccccggccccgcgcgcgcccaaggg 505
Query: 121 atgctcagatcgcacatagcccggagatgctcagctggagcatcctctagctgttcctgg 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgctcagatcgcacacagcccggagatgctcagctggagcatcctctagctgttcctgg 445
Query: 181 gtccccacacctgcctgtcatgctctcctaggccccgcaggacgccgggctcttactggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtccccacacctgcctgtcatgctctcctaggccccgcaggacgccgggctcttactggc 385
Query: 241 atggtgcccagcagccaaacgctagctcctaggggacctcaccaccaccaggcttttgtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atggtgcccagcagccaaacgctagctcctaggggacctcaccaccaccaggcttttgtc 325
Query: 301 cccgaggcg 309
|||||||||
Sbjct: 324 cccgaggcg 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
