Query= MSMg01no500_a07.b1 MSMg01no500_a07.b1 CHROMAT_FILE:
MSMg01no500_a07.b1 PHD_FILE: MSMg01no500_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:34 2005
(552 letters)
>mm_chr17_55019043_55019994
Length = 952
Score = 1002 bits (518), Expect = 0.0
Identities = 542/550 (98%), Gaps = 4/550 (0%)
Strand = Plus / Plus
Query: 5 gaattcatagttaatgccaa-tacttcgggaatattttaagatatatctcccatgctgcc 63
|||||||||||| | || || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatagttta-gcaaaatacttcgggaatattttaagatatatctcccatgctgcc 263
Query: 64 taaaaatatatgattcccgtgtgtataacagcatcaccccttgtactggctagttttgtg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taaaaatatatgattcccgtgtgtataacagcatcaccccttgtactggctagttttgtg 323
Query: 124 tcaacttgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgcctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcaacttgacacagctggagttatcacagagaaaggagcttcagttgaggaaatgcctcc 383
Query: 184 atgagatccaactgtaaggcattttctcaagtagtgatcaagaggg-aaaggccccttgt 242
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 384 atgagatccaactgtaaggcattttctcaagtagtgatcaa-aggggaaaggccccttgt 442
Query: 243 ggatgggaccatctctgggctggtaatcttggttctataagaaagcaggctgagcaagcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggatgggaccatctctgggctggtaatcttggttctataagaaagcaggctgagcaagcc 502
Query: 303 aggggaagcaagccagtaaagaatatccctccatggcctctgcatcagctcctgcttcct 362
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct: 503 aggggaagcaagccagtaaagaatgtcccgccatggcctctgcatcagctcctgcttcct 562
Query: 363 gacctgcctgagttccagtcctgacttccttcaatgatgaacagcaatgtggaagtgtaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gacctgcctgagttccagtcctgacttccttcaatgatgaacagcaatgtggaagtgtaa 622
Query: 423 gctgaataaaccctctcctccccaacttgcttctaggtcatgatgtttgtgcaggaatag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctgaataaaccctctcctccccaacttgcttctaggtcatgatgtttgtgcaggaatag 682
Query: 483 aaaccctgactaagacacccctcattccagcttcttgaagtaaacagaagaatgagaatt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaccctgactaagacacccctcattccagcttcttgaagtaaacagaagaatgagaatt 742
Query: 543 tgtggtctga 552
||||||||||
Sbjct: 743 tgtggtctga 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no500_a07.g1 MSMg01no500_a07.g1 CHROMAT_FILE:
MSMg01no500_a07.g1 PHD_FILE: MSMg01no500_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:26:34 2005
(628 letters)
>mm_chr17_55190106_55191133
Length = 1028
Score = 1176 bits (608), Expect = 0.0
Identities = 623/628 (99%)
Strand = Plus / Minus
Query: 1 tgaatatagatttatcagagatattggtaaaaagcttgacttttctgtttgggcttttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 tgaatatagatttatcagagatattggtaaaaagcttgacttttctgtttgggcttttat 769
Query: 61 atttagcttcataagaaaaatctggaaattttatctttttctgtttaatggaagagtttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 atttagcttcataagaaaaatctggaaattttatctttttctgtttaatggaagagtttg 709
Query: 121 agttttgctcatagttatttactgttctagctgttggtggtacttagaagaatggagcct 180
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 708 agttttgctcatagttgtttactgttctagctgttggtggtacttagaagaatggaacct 649
Query: 181 acaaaggaagtagactaaagtttcctgtaatagccgactttattcagagcatcagttaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 acaaaggaagtagactaaagtttcctgtaatagccgactttattcagagcatcagttaat 589
Query: 241 ttatatttttgagggctaagagtaatctcttaagtgaagagtacaattacaagggcaagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttatatttttgagggctaagagtaatctcttaagtgaagagtacaattacaagggcaagc 529
Query: 301 cacacatggcacataagctgaatgtgttagtcatgtcacaatcatgtttttacttagaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 cacacatggcacataagctgaatgtgttagtcatgtcacaatcatgtttttacttagaag 469
Query: 361 tatgcaaacaaataacaatagtctgttgtaatgaataatatgaagtacactcactcttat 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 468 tatgcaaacaaataacaatagtctgttgtaatgaataatctgaagtacactcactcttat 409
Query: 421 ctgttagacttgggaggggcatgaaagcattttccaaaataattatgcattttaaggaaa 480
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 408 ctgttagacttgggaggggcatgaaagcattttccaaaataattatgcgttttaaggaaa 349
Query: 481 ctggttatgtgactcttatcttggcttcttagagcacccagaaccctactcagaaatcta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctggttatgtgactcttatcttggcttcttagagcacccagaaccctactcagaaatcta 289
Query: 541 ctcccttggctccacttggatcattttccaacactaattcttctctgaagttttggtaga 600
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 288 ctcccttggctccacttggatcattttccaacactaattcttctctgaagttctggtaga 229
Query: 601 attctactctgaattcttatgaccatga 628
||||||||||||||||||||||||||||
Sbjct: 228 attctactctgaattcttatgaccatga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space: 629124
Effective search space used: 629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
