BAC Information

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BAC

Clone NameMSMg01-500L09
Chromosome17 (Build37)
Map Location 93,285,380 - 93,285,801
singlet/doubletsinglet
Overlap genenone
Upstream geneEG640442, LOC627395, LOC676141, LOC668877
Downstream geneLOC100043746, LOC100043747, LOC100043748, LOC100043907, Adcyap1, LOC676157, LOC627503
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500L09.T7 (MSMg01no500_l09.b1)MSMg01-500L09.TJ (MSMg01no500_l09.g1)
ACCAG576486AG576487
length680724
length of high quality
(start - end)
598 (42 - 639)424 (80 - 503)
definitionCHROMAT_FILE: MSMg01no500_l09.b1 PHD_FILE: MSMg01no500_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:23 2005CHROMAT_FILE: MSMg01no500_l09.g1 PHD_FILE: MSMg01no500_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGATCCGCGGAATTCCTGATC
TTTCCAATCTTTTAGTTTGAATGCGTGTTGGATTTTGTCAAATGCTTTCT
CAGCATCTAATGAGACGATCATGTGTTTTTTGTCTTTGAGTTTGTTTATA
TAATGGAGTATGTTGATGGGTTTCCATATATTAAACCATCCCTGCATCCT
GGAATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGTTCTTG
GATTCCTTTAGCAAGATTTTTTTTTAGTATTTTTGCATTGATATTCATAA
TATTAATTGGTCTAAAGTTCCCTATCTTTGTTGGATCTTTCTGTGGTTTA
GGTAGCAGAGTAATTGTGGCTTCATAGAATATGTTGGGTAGAGTACCTTC
TACTTCTATTTTGTGGAATAGTTTGTGAAGAACTGTAATTAGATCTTCTT
TGATGGTCTGATAGAACTCTGCACTAAACACATCTGGTCCTGGGCTTTTT
TCGGTTGGGAGACTATTAATTACTGCTTCTATTTCCTAGGGGATATAGGA
CTATTTAGATCATTATCCTGATCCTGATTTTACTTTGGTACCTAGTATCT
GTCTAGAAATTTGTCCATTTAATCCTCGTTCTCCAGTTTTGTTGAGTATA
GCCTTTTGTAGAAGGATCTGATGATGTTTT
TTCTTTCGATGCAATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATGATTATAGGCTGTGAG
CTGCCTAACATGGGAGATGGAAATTGAACTTGGGTATATGTACTGAAAGA
GCAATACTAAGGATCAGCAACTCCTAACTGCTCAGCTGACTGTCTTTGTA
GCCCTGTGTGTGCTCTTGTTAAAAATCACCATTAATTCTTTTCTGTAAAG
GCATAGGTATATTTAATTTTTTCATATGGCCTGGACTATACCTACAACAT
AATTAATTATATGTGAATTCCAAGAGTAGATGTTAAAGAAATAATTACCT
TCTATAGAGTTGCTTAACCTTAGAACCTAATAGCAATACTTGGCAAAATT
TAAGTATCTGTGTGTGAAATATATGTAAGGGCAGTCTAACTGGTACAGTC
AGCTTTATTCCCGGATCCCTGTTTACGTTTTAGATCTATAAATACAAAAG
ATATAGTTAAGTGAAGATATTACATTATGGCTTTGCATTCTTTATAGTAA
TACTTAACCACAATATCTATCACAAAATACCATATTATCTGCTCTTGTTT
ATTAAATATAAGAAAATAAATACTACAAGGACAATTTTCCCTTTGGTTAA
CTTTCTATTGTAATTATTCATTGAACTTACTCCAAGCTATTAAAATTGAT
TTAATATCTTCTACTCCTACTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_l09.g1 MSMg01no500_l09.g1 CHROMAT_FILE:
MSMg01no500_l09.g1 PHD_FILE: MSMg01no500_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:23 2005
         (424 letters)



>mm_chr17_93285180_93286001
          Length = 822

 Score =  793 bits (410), Expect = 0.0
 Identities = 420/426 (98%), Gaps = 6/426 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacatgattataggctgtgagctgcctaacatgggagatggaaattgaacttgggtatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacatgattataggctgtgagctgcctaacatgggagatggaaattgaacttgggtatat 260

                                                                       
Query: 61  gtactgaaagagcaatactaaggatcagcaactcctaactgctcagctgactgtctttgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtactgaaagagcaatactaaggatcagcaactcctaactgctcagctgactgtctttgt 320

                                                                       
Query: 121 agccctgtgtgtgctcttgttaaaaatcaccattaattcttttctgtaaaggcataggta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccctgtgtgtgctcttgttaaaaatcaccattaattcttttctgtaaaggcataggta 380

                                                                       
Query: 181 tatttaattttttcatatggcctggactatacctacaacataattaattatatgtgaatt 240
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 381 tatttaattttttcatatggcctggactatac----aacataattaattatatgtgaatt 436

                                                                       
Query: 241 ccaagagtagatgttaaagaaataattaccttctatagagttgcttaaccttagaaccta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 ccaagagtagatgttaaagaaataattaccttctatagagttgcttaaccttagaaccta 496

                                                                       
Query: 301 atagcaatacttggcaaaatttaagtatctgtgtgtg--aaatatatgtaagggcagtct 358
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 497 atagcaatacttggcaaaatttaagtatctgtgtgtgtgaaatatatgtaagggcagtct 556

                                                                       
Query: 359 aactggtacagtcagctttattcccggatccctgtttacgttttagatctataaatacaa 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aactggtacagtcagctttattcccggatccctgtttacgttttagatctataaatacaa 616

                 
Query: 419 aagata 424
           ||||||
Sbjct: 617 aagata 622


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 822
Length adjustment: 9
Effective length of query: 415
Effective length of database: 813
Effective search space:   337395
Effective search space used:   337395
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)