BAC Information

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BAC

Clone NameMSMg01-500O09
Chromosome17 (Build37)
Map Location 52,327,932 - 52,328,158
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-500O09.T7 (MSMg01no500_o09.b1)MSMg01-500O09.TJ (MSMg01no500_o09.g1)
ACCAG576625AG576626
length929619
length of high quality
(start - end)
---230 (55 - 284)
definitionCHROMAT_FILE: MSMg01no500_o09.b1 PHD_FILE: MSMg01no500_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:37 2005CHROMAT_FILE: MSMg01no500_o09.g1 PHD_FILE: MSMg01no500_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:27:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCACACACNCCCCAATAATTTNNNNNCCTCNNNANNNAATTCNCTTCT
TACANTACCTGAGGGGNGNNAANNNNNTNNATACCTTATAAGAAGAGNTN
ANNANATGNNANANANNNATATTNTTTGGTAANNANTTAATGTTTTTGTT
TTTATNNNANANNGNNNTTTGGGNAAGTTGTNNATTGGTTTTNAAGNNTT
TTNTTNANNAAAANANTAATTTTTTTTTTTTAGAAGAGNTTNNNNNNNNT
TTTTTTTNTTTAAAATTTTTTTTTTTTTAAATGAGGGGGGGGGCTGGAGT
GGGAGGCTGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGTGGGGTGCGGG
CGGTNNNNTCATTATTTTTAACCCTCTAAAGCACGGGGNNNNNNNNNNTC
TANNNTAGGTGGTCTTGAGTGGCTNANNAGGGGNTCTGGGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTNNNTTNTNTNNNNNNNNNNNNNNNNNNNNN
NNNNNTTNTNNNNNNTTTTNTNNTTNTTTTTTTTTNNNNTNNNNNNNNTT
NNTNNNNNNNTNNNNTTNNNNTTTNNNTTTNTTTTTTTNTTTTTTTNNNN
NNNNNTTTTNTTTNNNNNNNNNNNNNNNTTTTTNTTTTNTTTTTTNNTNT
TTTNNNNNNNNTTTTNTNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTNTTTNTTNTTTTNTNNTTTTTTNNTTTTTTTTTNNNTTNTTTN
NTTTTNTNNNNTTTTTNTNNTNNNTTTNNNNNNNNTTTTTTTTTTTTTTN
TTTTTTTTTTTTTTTTNNNATTTTNNNTAATTTTTTNTATATTTNTTTNA
TTAATATTTATTATTAATATTATTTGGTG
GCCTGTTTTCAAAGAAGGGGTNGAACTATAGAAGTTACAAAAAGAATTCT
GGGATGCAGAAAATGTTCAGTTTCTGGGTCAGAATGATGGTCACTGGCTT
GTTGCAATGATGAAGTGCAGAGAGCTGCACATGTATTGCAGGTGTGTTTT
GTGAATGTATGTGGGTACCAGTAAGATATTTAAACAAAAGCTTTCTCACA
TGACCTGGGGACTTCTTTTATGTGTCCTCTTGTTTTGTTGCTCATAGTAG
GCTGGAACCCACAATTTTATTTATTTTTCAGTCTTCATTATTGTTTTATC
TGCAAAGCTTTCAGGGAACAGGAAAGAGTATCAATTCAAGCTTGGTGGCT
GAGCAAGTCTCATTACTTATTGACAGTGATAGCATCGATTTCACCGGCAG
CCCTCTCTCCTGCTATTCATTCAACGGGTAGCGCCTAATTTGAGAACAAT
GGAATGGACATGTAGAATTTTTATTTGTTAAAGGGGCAACATCCTAGAAA
TGAAATTACAATTAAGTTGAGATAAATTGTCATAGAACTTATTTTTTGAT
ATACATTAAGGCTATAATCGAACGGCATTATGCACTGCTTACGATGGTTA
TGATAACATAGTCGAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no500_o09.g1 MSMg01no500_o09.g1 CHROMAT_FILE:
MSMg01no500_o09.g1 PHD_FILE: MSMg01no500_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:27:37 2005
         (230 letters)



>mm_chr17_52327732_52328361
          Length = 630

 Score =  400 bits (207), Expect = e-116
 Identities = 222/227 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcagaaaatgttcagtttctgggtcagaatgatggtcactggcttgttgcaatgatgaa 60
           |||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 201 tgcagagaatgttcagtttctgggtcagaatgatggccattggcttgttgcaatgatgaa 260

                                                                       
Query: 61  gtgcagagagctgcacatgtattgcaggtgtgttttgtgaatgtatgtgggtaccagtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgcagagagctgcacatgtattgcaggtgtgttttgtgaatgtatgtgggtaccagtaa 320

                                                                       
Query: 121 gatatttaaacaaaagctttctcacatgacctggggacttcttttatgtgtcctcttgtt 180
           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
Sbjct: 321 gatatttaaacaaaagctttctcacatgacctggggacttcttgaatgtgtcctcttgtt 380

                                                          
Query: 181 ttgttgctcatagtaggctggaacccacaattttatttatttttcag 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgttgctcatagtaggctggaacccacaattttatttatttttcag 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)