Query= MSMg01no501_e16.b1 MSMg01no501_e16.b1 CHROMAT_FILE:
MSMg01no501_e16.b1 PHD_FILE: MSMg01no501_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:06 2005
(655 letters)
>mm_chr17_40900471_40901521
Length = 1051
Score = 1172 bits (606), Expect = 0.0
Identities = 633/644 (98%), Gaps = 6/644 (0%)
Strand = Plus / Plus
Query: 13 gaattctgagtctgacgaggagacactttgcaaagattacctttctctttctgattcaag 72
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gaattctgagtctgatgaggagacactttgcaaagattacctttctctttctgattcaag 272
Query: 73 tgaaaattacaccgtggaagcattgaatgaaagtgaaagtggtgattctgaaaatgaaag 132
||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 273 tgacaattacaccgtggaagcattgagtgaaagtgaaagtagtgattctgaaaatgaa-- 330
Query: 133 acagagtgtattgtaagaaggggacatgcccacatccttcaacctagtgataaggagagg 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 --agagtgtattgtaagaaggggacatgcccacatccttcaacctagtgataaggagagg 388
Query: 193 cgggtgtgttctgtgagggtttgactaggaactttgtggcaccaaatgtggatctaagct 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cgggtgtgttctgtgagggtttgactaggaactttgtggcaccaaatgtggatctaagct 448
Query: 253 ttaatgaggaggatgataaagggccagtgaaaattccagatcatatcagtggagaaagaa 312
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 449 ttaatgaggaggatgataaagggccagtgaacattccagatcatatcagtggagaaagaa 508
Query: 313 caaacatatatttttctctccttgtttatcagggacagaatatagcagaatatgacagaa 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 caaacatatatttttctctccttgtttatcagggacagaatatagcagaatatgacagaa 568
Query: 373 aagacaaatttacatgcccatcaaatgcatacagaaaactactattatcccaagaacttc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 aagacaaatttacatgcccatcaaatgcatacagaaaactactattatcccaagaacttc 628
Query: 433 aaggatgtttctattatgaaatgaaagcttttattgggctcaggatatgcatggagtact 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aaggatgtttctattatgaaatgaaagcttttattgggctcaggatatgcatggagtact 688
Query: 493 tgtgtataaaaccaagctatcaggattactggtcaaatgagggacccgactttcttgcga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgtgtataaaaccaagctatcaggattactggtcaaatgagggacccgactttcttgcga 748
Query: 553 gtggatgatgggcaggatgtgaacgttgataaaacagacacaaaagctgaatattggcat 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gtggatgatgggcaggatgtgaacgttgataaaacagacacaaaagctgaatattggcat 808
Query: 613 tccaagcaaggaattattttcttattttctgnca-cctctccaa 655
||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 809 tccaagcaaggaattattttcttattttctg-caacctctccaa 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 655
Length of database: 1051
Length adjustment: 10
Effective length of query: 645
Effective length of database: 1041
Effective search space: 671445
Effective search space used: 671445
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_e16.g1 MSMg01no501_e16.g1 CHROMAT_FILE:
MSMg01no501_e16.g1 PHD_FILE: MSMg01no501_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:06 2005
(585 letters)
>mm_chr17_41025022_41026006
Length = 985
Score = 1093 bits (565), Expect = 0.0
Identities = 580/585 (99%)
Strand = Plus / Minus
Query: 1 aaagccctgatctacatagtgagttcccagtcagcaagggctaaatagtaaaaccctata 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 aaagccctgatctacacagtgagttcccagtcagcaagggctaaatagtaaaaccctata 576
Query: 61 tagacaaataaacaggaacaaaaaaatattgatctcttcaacgtgtttgtttaccatttt 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 575 tagacaaataaacaggaacaaaaaaatattgatctctttaatgtgtttgtttaccatttt 516
Query: 121 attgtggctcataatgttgtcttatgtagaatactctgccatccccatatctaagttgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 attgtggctcataatgttgtcttatgtagaatactctgccatccccatatctaagttgtc 456
Query: 181 tgttggttcagttttcatcttgtgactgaacacaatgtaatttaaaaagaggattttttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 tgttggttcagttttcatcttgtgactgaacacaatgtaatttaaaaagaggattttttt 396
Query: 241 ttattttggtttacaatttccaagattggagaaaaaggttgcttggctctgttactgtgg 300
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 395 ttattttggtttacaatttccaaggttggagaaaaaggttgcttggctctgttactgtgg 336
Query: 301 cctgttgtgaggccaagcaccatgggagaaggacatggaaagtgagaactcttatctcat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctgttgtgaggccaagcaccatgggagaaggacatggaaagtgagaactcttatctcat 276
Query: 361 aacagtcagaaagcagaaagagctcagaggcagaacacaatatgaccacaataatgatat 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 agcagtcagaaagcagaaagagctcagaggcagaacacaatatgaccacaataatgatat 216
Query: 421 ggcctcagtgacatactttctccagttagaccgttctccaaaagtttcccaggccttccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ggcctcagtgacatactttctccagttagaccgttctccaaaagtttcccaggccttccc 156
Query: 481 caatagattcaccagctgaggaccaagccttcaaaccttaaaacagattttacaatttta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 caatagattcaccagctgaggaccaagccttcaaaccttaaaacagattttacaatttta 96
Query: 541 ttactcagttaactgtttttccatttataagtcatgggttccgtg 585
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 ttactcagttaactgtttttccatttataagtcatgggttccgtg 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space: 560625
Effective search space used: 560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
