Query= MSMg01no501_j17.b1 MSMg01no501_j17.b1 CHROMAT_FILE:
MSMg01no501_j17.b1 PHD_FILE: MSMg01no501_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:28 2005
(609 letters)
>mm_chr17_5665717_5666725
Length = 1009
Score = 1154 bits (597), Expect = 0.0
Identities = 603/605 (99%)
Strand = Plus / Minus
Query: 5 gaattcacctctttccgctatgatcaagttgctgctacaaaatttagtgttctatgtatg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gaattcacctctttctgctatgatcaagttgctgctacaaaatttagtgttctatgtatg 750
Query: 65 gccagcattcgtagctcacattgtatgaatagcactaccaggcaatcagaagcattaatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gccagcattcgtagctcacattgtatgaatagcactaccaggcaatcagaagcattaatt 690
Query: 125 ggaaatttacaaagatcaatatttatgcattatttagtaggctttcagggaaaggtggtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggaaatttacaaagatcaatatttatgcattatttagtaggctttcagggaaaggtggtg 630
Query: 185 ctaactgttgccaacactgtagggtctgcatagcaggaagccctgcagtgctacttggtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ctaactgttgccaacactgtagggtctgcatagcaggaagccctgcagtgctacttggtt 570
Query: 245 cttttctgtttgccttcagagcccagggccagatctcccacacttacttatctctgcagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cttttctgtttgccttcagagcccagggccagatctcccacacttacttatctctgcagt 510
Query: 305 gtggtaacggccttaggaagactgcagccatggaccacacacccataggaagaatgcagc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtggtaacggccttaggaagactgcagccatggaccacacacccataggaagaatgcagc 450
Query: 365 aaacccctcacataccatatcgaggatatttctagaactaaatttgcatatgagaaaaat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaacccctcacataccatatcgaggatatttctagaactaaatttgcatatgagaaaaat 390
Query: 425 gatgttccgcccctaaaatagcatttagcttctctctcattctaaacactaacaccaatc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatgttccgcccctaaaatagcatttagcttctctctcattctaaacactaacaccaatc 330
Query: 485 actttggacatatccaattccccagccctgttgagtatgcagatcctttccagccctgcc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 actttggacatatccaattccccagccctgttgagtatgcagatcctttccagccctgcc 270
Query: 545 ctcccaatgtctatatatctacagatatctgtatagaatgagtctttagaaatgagctgc 604
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctcccaatgtctgtatatctacagatatctgtatagaatgagtctttagaaatgagctgc 210
Query: 605 ctcat 609
|||||
Sbjct: 209 ctcat 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_j17.g1 MSMg01no501_j17.g1 CHROMAT_FILE:
MSMg01no501_j17.g1 PHD_FILE: MSMg01no501_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:28 2005
(545 letters)
>mm_chr17_5512978_5513922
Length = 945
Score = 996 bits (515), Expect = 0.0
Identities = 538/547 (98%), Gaps = 4/547 (0%)
Strand = Plus / Plus
Query: 1 ttagaggacgattcaatgaggctcacccagaatacacacggaggcatgcaagtttcccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagaggacgattcaatgaggctcacccagaatacacacggaggcatgcaagtttcccca 260
Query: 61 aaccatcccaacaccaacttcacccaaaggcctttagtttgttttactgtattaatttat 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccatcccaacaccaacttcatccaaaggcctttagtttgttttactgtattaatttat 320
Query: 121 tctagaatgtttcactcaggtagtgctctttgacctggtaacttgatttca--gtgtcct 178
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tctagaatgtttcactcaggtagtgctctttgacctggtaacttgatttcacagtgtcct 380
Query: 179 tcccactccctctgaaggcaagctctcctgagccctctgcccagcactcccactggcctc 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcccactccctctgaaggcaagctctcctgagccctctgcccagcactcccactggcctc 440
Query: 239 cacctgggattctacgatgtaaggacaaagcagagacttgctggtcacgctcaagcagaa 298
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 tacctgggagtctacgatgtaaggacaaagcaga--cttgctggtcacgctcaagcagaa 498
Query: 299 acggctgagaaagaaccttcttggctctgctagtcatagcccagccgagtctcccacctt 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 499 acggctgagaaagaaccttcttggctctgctagtcatagcccagtcgagtctcccacctt 558
Query: 359 cttttggtggccctggctcttagcacaagtgccaggtgtctgtgcacagtctgacctatg 418
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttttggtggccctgactcttagcacaagtgccaggtgtctgtgcacagtctgacctatg 618
Query: 419 agctcattgagccaatacaacctcatccatgggtcctgctctcgttgggtctattctgtg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 agctcattgagccaatacaacctcatccatgggtcctgctctcgttgggtctattctgtg 678
Query: 479 tgtgtgatccacagtgggtccagaattcgtggttcttgaaccatatttcaattaagaatg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tgtgtgatccacagtgggtccagaattcgtggttcttgaaccatatttcaattaagaatg 738
Query: 539 cccaaga 545
|||||||
Sbjct: 739 cccaaga 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
