Query= MSMg01no501_m16.b1 MSMg01no501_m16.b1 CHROMAT_FILE:
MSMg01no501_m16.b1 PHD_FILE: MSMg01no501_m16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
(587 letters)
>mm_chr17_84250896_84251882
Length = 987
Score = 928 bits (480), Expect = 0.0
Identities = 563/602 (93%), Gaps = 25/602 (4%)
Strand = Plus / Plus
Query: 1 gaagtagagtttagttgaacaaagaaaacaatacaacaatgacgcagctccaagaacaga 60
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 201 gaagtagagtttagttgaacaaagaaaacaatacaacaatgacactgctccaagaacaga 260
Query: 61 acaagttctaagaacggcagccagcgctgaattctgaaggtgtctgcagagcaagagaac 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggttctaagaacggcagccagcgctgaattctgaaggtgtctgcagagcaagagaac 320
Query: 121 tgacacatacacaca-ga-tataatagttagctgctcagtccatttcagggtctccagga 178
||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacacatacacacaggact-taatagttagctgctcagtccatttcagggtctccagga 379
Query: 179 gccaatgatttgcaggtcctgcctttgaactttcccgacattcgcttggtgtactgagca 238
|||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 gccaatgattcgcagatcctgcctttgaactttcccgacatttgcttggtgtactgagca 439
Query: 239 gatgctggactc--tttctccgagtctgtggtcttctgcagatattgctggtggcaccta 296
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 440 gatgctggactcca---ctccgagtccgtggtcttctgcagatattgctggtggcaccta 496
Query: 297 tgctaatgtcttgttttgggtttttcattgactagattcagctggtttttctattgatgc 356
|||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 497 tgctaacgtcttgttttgggttttccattgactagactcagctggtttttctattgatgc 556
Query: 357 tataacacaaaattagtggtgtcaaaataatgctagtaagccagacctggtggcaacaga 416
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 557 tatgacacaaaattagtggtgtcaaaataatgctagtaagccaaacctggtggcaacaga 616
Query: 417 ctataatcctagctactggaggctgagacaggagagaaaattcaaagctatttgtgctgc 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ctata------gctactggaggctgagacaggagagaaaattcaaagctatttgtgctga 670
Query: 477 agaggaagcccaag--------caactatgggagactatctc---gaagaagaagaagaa 525
|||||||||||||| |||||||||||||||||||| ||| |||||||||||
Sbjct: 671 agaggaagcccaagggcctgagcaactatgggagactatctctcagaaaaagaagaagaa 730
Query: 526 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 731 gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa 790
Query: 586 ga 587
||
Sbjct: 791 ga 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 137
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no501_m16.g1 MSMg01no501_m16.g1 CHROMAT_FILE:
MSMg01no501_m16.g1 PHD_FILE: MSMg01no501_m16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:28:41 2005
(594 letters)
>mm_chr17_84405570_84406562
Length = 993
Score = 1110 bits (574), Expect = 0.0
Identities = 589/594 (99%), Gaps = 1/594 (0%)
Strand = Plus / Minus
Query: 1 cacgacacagggatctaggcttacgcatccattgccacagtcatgataaaaggcagccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 cacgacacagggatctaggcttacgcatccattgccacagtcatgataaaaggcagccat 734
Query: 61 cccctccaggtgcttccttgtgatctttgtgtggtttgcgatccgctctgcgtgttatga 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 733 cccctccaggtgcttccttgtgatctttgtgtggtttgcgatctgctctgcgtgttatga 674
Query: 121 gactatttaacgggaactccaccccctcacaccgccccactccaccttacggctcctagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 gactatttaacgggaactccaccccctcacaccgccccactccaccttacggctcctagt 614
Query: 181 cctggtgtttcttgcttgataacgaagggactctctaaatcacagagatccctgttcgca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 613 cctggtgtttcttgcttgataacgaagggactctctaaatcacagagatccctgttcaca 554
Query: 241 gggatttctgctggctgagctctgcttatgattgcccataaaatccattccatctgtcgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gggatttctgctggctgagctctgcttatgattgcccataaaatccattccatctgtcgg 494
Query: 301 tgagacccataatgacataggggcgcatttgaggacacgagtcctgacttcagagctcag 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tgagacccat-atgacataggggcgcatttgaggacacgagtcctgacttcagagctcag 435
Query: 361 caccctgaagagaatggcgtgtctgtttcgttttcttagagggacaacaaatggtggctc 420
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 434 caccctgaagagaatggcgtgcctgtttcgttttcttagagggacaacaaatggtggctc 375
Query: 421 tgaggctgctctacgtctctccacggttttcacacgaaaattccctcagaactacattta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgaggctgctctacgtctctccacggttttcacacgaaaattccctcagaactacattta 315
Query: 481 aacgccccctccagtggccctccacctgtggactgttagggttcaatgtgaaacgtcccc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 314 aacgccccctccagtggccctccacctgtggactgttagggttcaatgtgaaacctcccc 255
Query: 541 cttgagcccataaccgagcatgtagtctctgcccctggtgctgttcggagtgct 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 cttgagcccataaccgagcatgtagtctctgcccctggtgctgttcggagtgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 993
Length adjustment: 10
Effective length of query: 584
Effective length of database: 983
Effective search space: 574072
Effective search space used: 574072
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
