BAC Information

Click to search

BAC

Clone NameMSMg01-503G21
Chromosome17 (Build37)
Map Location 36,325,881 - 36,326,438
singlet/doubletsinglet
Overlap geneH2-T3
Upstream geneLtb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785
Downstream geneLOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-503G21.T7 (MSMg01no503_g21.b1)MSMg01-503G21.TJ (MSMg01no503_g21.g1)
ACCAG578548AG578549
length735723
length of high quality
(start - end)		559 (63 - 621)---
definitionCHROMAT_FILE: MSMg01no503_g21.b1 PHD_FILE: MSMg01no503_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:42 2005CHROMAT_FILE: MSMg01no503_g21.g1 PHD_FILE: MSMg01no503_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:30:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTCTTTTCCCCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCC
NAAATCCGCGGAATTCCTAGGGTTGCCGGGTCTGACTAGGAGAGGGGGGC
CAGGCTCTCACACCATCCAGGTGATGTATGGCTGTGAGGTGTTCTTCGGG
AGCCTCTTCCGCGCTTATGAGCAGCATGGCTATGATGGCCAATATTACAT
CGCCCTGAATGAAGATCTGAAAACGTGGACAGCAGCAGACATGGCAGCAG
AGATCACCAGAAGCAAGTGGGAGCAGGCTGGTTATACAGAGCTCCGTAGG
ACATACTTGGAGGGCCCATGCAAGGATTCCCTGCTCAGATACCTGGAGAA
CAGAAAAAAGACACAGGAGTGCACAGGTGGGTGGCTGCAGGCAACTCCAT
CTCCCTTTGCCTCTGTACTGAGTTCAGTCCAGACAGAGCAGAAACTCACT
AGCTGGGAAAACTCCCATCTCTTTTTCTTTTTTCTTTTTGTTTGTTTGTT
TGTTTGCTTGTTTGGTTGGTTTTTTTGTTTTTTAATTTTAAAAGGTGACA
ACAGAGAAATAGCATATGGAAATTACACAAACCAAAGGCTATACCCAGCT
CAGTGAGCTTGTAAACAGTTAGAATCGCCACTTTGGACCAGTAGAGAATA
TGAATTTTACATATTCTCCATTAAATATACTCATGGCTATCCAACATCGA
CCCCATGGGTGCAGGGTATGGAGAGAGAGACAGAA

NNNNCCCGATAANNGNNTAGCTGGCGGCGCCTGGCTTTCAATAAGGTGAC
CTATAGAAGATTCGCGGAATGCTTCCAGAGGCTATATCTACTTGTANNAG
CTGGANTAAGTAGCTTATGAAAACTGAAGGCTGACTAAANTTCCNGCTAT
TCTGTCAACAACAAACCATTAAGGGTCCTTTCCAAAAACTGAATTTTGAA
CTATCTGGGGGCCCCCCCCCCTTCCCGGGATTTTCCAAAAATTGTTCTTT
TTTGGTTGGTGAGACAACCACCTTTTTTATTTCAAAAACCCCCTTTTTTT
ATTATGTAAAACTTTTTTATAAAAAGGAAAAAACCTTTTCTCCCCAGGGT
TTTTTTTTTTTCTCCCCCCCCCAAAAAATTGGGCCCCTCCCAGGAGGGGG
GGGGGGATACTCTCTTTTTAGAATAAAAAAAAACCCCGGGGGGTTTTCTT
CTTTTTTAAAATTTAACCCACCCACCCCNANNGGGGGGGCCTTCAAAAAG
GTCTTTCTTTTNCAAGGGGGGTGTTTACCCCCCTTTCCCTCAAAACACCC
CCCCCAAAATAAAAAAAATACCCCCCCCCCCTTCCTTTNNCTTTTTTTTT
TTTTTTTTCCCCCCCCCCCCACTTAATATAACATTTTTTCCCCCTCCCCC
CCCCTTCTACCCCCTTTTTTTTTTTTTTAAGATAATTAAAAANTTTGGTT
TNTTATCTTTTTTCTCCCCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no503_g21.b1 MSMg01no503_g21.b1 CHROMAT_FILE:
MSMg01no503_g21.b1 PHD_FILE: MSMg01no503_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:30:42 2005
         (559 letters)



>mm_chr17_36325812_36326773
          Length = 962

 Score =  880 bits (455), Expect = 0.0
 Identities = 533/563 (94%), Gaps = 9/563 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcctagggttgccgggtctgactaggagaggggggccaggctctcacaccatccaggt 60
           ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 attcctagggtgggcgggcctgactaggagaggggggccaggctctcacaccatccaggt 568

                                                                       
Query: 61  gatgtatggctgtgaggt---gttcttcgggagcctcttccgcgcttatgagcagcatgg 117
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gatgtatggctgtgaggtggagttcttcgggagcctcttccgcgcttatgagcagcatgg 508

                                                                       
Query: 118 ctatgatggccaatattacatcgccctgaatgaagatctgaaaacgtggacagcagcaga 177
           |||||||||||   ||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 507 ctatgatggccgcgattacattgccctcaatgaagatctgaaaacgtggacagcagcaga 448

                                                                       
Query: 178 catggcagcagagatcaccagaagcaagtgggagcaggctggttatacagagctccgtag 237
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cacggcagcagagatcaccagaagcaagtgggagcaggctggttatacagagctccgtag 388

                                                                       
Query: 238 gacatacttggagggcccatgcaaggattccctgctcagatacctggagaacagaaaaaa 297
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gacctacttggagggcccatgcaaggattccctgctcagatacctggagaacagaaaaaa 328

                                                                       
Query: 298 gacacaggagtgcacaggtgggtggctgcaggcaactccatctccctttgcctctgtact 357
           |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 327 gacacaggagtgcacaggtgcgtggctgcagacaactccatctccctttgcctctgtact 268

                                                                       
Query: 358 gagttcagtccagacagagcagaaactcactagctgggaaaactcccatctctttttctt 417
           | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 267 gggttcagtccagagagagcagaaactcactaggtgggaaaactcccatctctttttctt 208

                                                                       
Query: 418 ttttctttttgt-ttgtttgtttgtttgcttgtttggttggtttttttgttttttaattt 476
           |||||||||||| ||     ||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ttttctttttgtatt-----tttgtttgcttgtttggttggtttttttgttttttaattt 153

                                                                       
Query: 477 taaaaggtgacaacagagaaatagcatatggaaattacacaaaccaaaggctatacccag 536
           ||||||||||||||||| ||||| | |||| |||||||||||||||| |||||||| |||
Sbjct: 152 taaaaggtgacaacagaaaaataacgtatgaaaattacacaaaccaatggctatacacag 93

                                  
Query: 537 ctcagtgagcttgtaaacagtta 559
           |||||||||||||||||||||||
Sbjct: 92  ctcagtgagcttgtaaacagtta 70


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 962
Length adjustment: 10
Effective length of query: 549
Effective length of database: 952
Effective search space:   522648
Effective search space used:   522648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |