NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTTGGTTCCCCGGATCCTTCTAAGGCAAACTTTATTGCTTA
CTTCTCAGGAAGACCCCAAACCCAGAAAATGGTGCTGCTTATATAGCCCG
CAGCATGACGTTTCAGCACCTGATGTGGTGTGACAGCACCTGATTAGTTG
CTCGCCCATCACCCCATTAATATGCCCTGAGATGGGCAGTGACTGAGCGT
GAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCGCAG
TGGAAGCCATCACCATCTTACAATGGTGATTTCTCACAGCACTGCTCTCC
ACATGTTATAGTGCTTCACTGTGGTGTCAAATCCTCTACTGTGGTGACAT
AGTGCTCCAAGGTAGTATGAACGGGCTCCACTGTGTTGTCACCATGCTCC
ACTGTGATGTCACAGTGGTCTGCACTGGTGTCACAGTGCTCCTCTGTGGT
GTCATAGTGCTCAACTGTGGTGTCACCGTGCTCCACTGTGGTGTCACAGT
TCTCCACTGTGGAGTCACAGTGCTCCACTGCAGTGTCACTGTGCTCCACT
GTGGTGTCACATCCTCTACTGTGGTATCACTCTGCTCCTCTGTGGTGTCA
AATTGCCCAACTGTGCTGTCACATTGCACCACTGTGATGGCACATTGCTT
CTCTGTGATGTCACAGTGCTCAACTGTGGTGTCACTCTGCTTCTCTGTGG
TGTC

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTTTAGCTCTGTACTCCACT
TTTAATAGGGTTATTTGGTTCTCTGCAGCCTAATTTCTTGAGTTTTTTTT
ATATATTGGATATTACTCCTCTATTGGATGTAGGATTGATGAAGATCTTT
TGTCAATCTGTTAGTTGTCCTATTGCCAGTTTCCATTACCTTACAGAAGC
TTTGCAATTTTATGAGATCTCATTTGTTGACAGAATCAATGCAATCCCCA
TCAAAACCTCAAGCTGTACCGCAGAGCAATAGCGATAAAAACTGCATGAT
ATTGGTACAGAAACAGGCAACTAAGTCCATGGAACAAAAGTGAAGATCCA
GAAATGAACTCACACATGTATGGTCACTGTATCTTGGACAAAGGAGCTAA
AACCATCCGGTGGAAACAGACAGCATTTTCAACAAACATTTCAGGGCTTG
GGATTTAGCTCAACTGTAGAGTACTCACATGTGGTCCAGGAAGCCCAAAG
TTTCCTGTCTAACAACAACAACAACAGCAACAAAACAGCTATGATGGCCA
TCAAATTTGTCATCATGACACTCTGGGTAGGGGGTTAAGAAGATCAAGAG
TTCAAGAACAGCTCTGACTATGTAACATCAAGACCAATCTGGACAAGAGA
CATGGTCTCAACAATAGAGAAGAAACAATGAAGGCAGTAGAGATGGGAAG
GATGAGAAGAAAGAGANTN

Query= MSMg01no505_b05.b1 MSMg01no505_b05.b1 CHROMAT_FILE:
MSMg01no505_b05.b1 PHD_FILE: MSMg01no505_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:32:54 2005
         (650 letters)



>mm_chr17_3020174_3021224
          Length = 1051

 Score =  186 bits (96), Expect = 5e-51
 Identities = 253/310 (81%), Gaps = 27/310 (8%)
 Strand = Plus / Plus

                                                                       
Query: 342 tgtggtgacatagtgctccaaggtagtatg-aac-gggctccactgtgttgtcacca-tg 398
           ||||||| || |||||||||  || | ||| ||| | ||||||||||| ||||| || ||
Sbjct: 542 tgtggtgtcacagtgctccactgt-g-atgtaactgtgctccactgtgctgtca-cagtg 598

                                                                       
Query: 399 ctccac---tgtgatgtcacagtggtctgcactg-g-tgtcacagtgctcctctgtggtg 453
            |||||   ||||||   |||||| ||  ||||| | |||||||||||||| ||||| ||
Sbjct: 599 atccactgttgtgat---acagtgttc--cactgtgatgtcacagtgctccactgtgctg 653

                                                                       
Query: 454 tcatagtgctc-aactgtggtgtcaccgtgctccactgtggtgtcacagttctccactgt 512
           ||| || | || || ||||||||||| |||||||  |||| ||||||||| |||||||||
Sbjct: 654 tcacagagttctaa-tgtggtgtcacagtgctcctttgtgatgtcacagtcctccactgt 712

                                                                       
Query: 513 ggagtcacagtgctccactg--cagtgtcactgtgctccactgtggtgtcaca-tcct-c 568
           ||||||||||||||||||||  |  |||||||||||||||||||| ||||||| | || |
Sbjct: 713 ggagtcacagtgctccactgttc--tgtcactgtgctccactgtgctgtcacagtgctgc 770

                                                                       
Query: 569 tactgtggtatcactctgctcctctgtggtgtcaaattgc-ccaactgtgctgtcacatt 627
            |||||||| |||||||||||| ||||| | ||| | ||| ||  |||| |||||||| |
Sbjct: 771 -actgtggtgtcactctgctccactgtgttttcacactgctcct-ctgtactgtcacagt 828

                     
Query: 628 gcaccactgt 637
           || |||||||
Sbjct: 829 gctccactgt 838



 Score =  126 bits (65), Expect = 6e-33
 Identities = 189/233 (81%), Gaps = 19/233 (8%)
 Strand = Plus / Plus

                                                                       
Query: 340 actgtggtgacatagtgctccaaggt-a-g-tatgaacgggctccactgtgttgtcacca 396
           |||||| || ||||||||||||| || | | |||  | | |||||| |||| || || ||
Sbjct: 207 actgtgatgccatagtgctccaatgtgatgttat--a-gtgctccaatgtgatgaca-ca 262

                                                                       
Query: 397 -tgctccactgtgatgtcacagtggt--ctgcactggtgtcacagtgctcctctgtggtg 453
            |||| ||| ||| |||||||||| |  |||   |||||||||||| ||||  |||||| 
Sbjct: 263 gtgctgcacagtggtgtcacagtgcttactg---tggtgtcacagtcctccaatgtggtt 319

                                                                       
Query: 454 tcatagtgctcaactgtggtgtcacc-gtgctccactgtggtgtcacagt-tct-ccact 510
           ||| ||||||| |||||| ||| ||| ||||||||||||| | ||||||| | | || ||
Sbjct: 320 tcagagtgctccactgtgatgt-acctgtgctccactgtgctatcacagtat-tgcc-ct 376

                                                                
Query: 511 gtggagtcacagtgctccactgcagtgtcactgtgctccactgtggtgtcaca 563
            ||| |||| ||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 377 ttggtgtcaaagtgctccactgtggtgtcactgtgctccactgtggtgtcaca 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 650
Length of database: 1051
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1041
Effective search space:   666240
Effective search space used:   666240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)